Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_3420 |
Symbol | gspD2 |
ID | 5355172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 3545781 |
End bp | 3548057 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640812471 |
Product | general secretion pathway protein D |
Protein accession | YP_001348780 |
Protein GI | 152986624 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.454827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCTTCGC TGTTCCTGCT GCTGGCGCTC GTCACTCCCG GCCTGGCGGC GACGGCGCAT CCGGCGCCTG CCGCCACTGC CGCCGCGCAG GAGGAAGAGC AGTGGACGAT CAACATGAAG GAGGCCGAGC TCGGCGACTT CATCGAGCAG GTCTCGGCCA TCAGTGGCCA GACTTTCATC GTCGATCCGC GAGTGAAGGG TCGGGTCACG GTGGTTTCCC AGGCGCGGCT GAACCTGGCG GAGGTCTACC AGCTGTTCCT TTCGGTGCTC GCCACTCATG GCTACGCGGT GCTGCCCCAG GACGGGCAGG CGCGCATCGT GCCGAACATG GAGGGGCGCC AGGACGCCGC CGGTGGCGGC GTCCACGTCG GGCCGGGCAG CCTGGAGACG CGGGTGATCC AGGCCCGGCA GACCTCGGTG GTGGAGCTGA TCCCGATGAT CCGTCCGCTG GTCCCGGCCC ACGGCCATCT CGCGGCGGTA CCCTCGGCCA ATGCGCTGAT CGTCAGCGAC CGGCGCGCCA ACATCGAGCG CATCGAGTCG ATCGTGCGCA GCCTCGACCA GGCCGGCGAG CACGACTACA GCATCTACGA CCTGCGCCAT GCCTGGGTCG CGGAAATCGC CGAGGTGCTC GACCAAAGCG TCACCCCGGC CGCCGGAAAG AACGCCGCCA CCGTCCAGGT CCTCGCCGAC AGTCGCAGCA ACCGCCTGGT CCTGCTCGGC CCGCCACAGG CGCGGGCCCG GCTGTTGCGC CTGGCGCAGT CGCTGGACGT GCCATCGTCG CGCTCGGCCA ACAGCCGGGT GATCCGCCTG CGCCATGGCG ACGCCAAGAC CATCGCCAGC ACCCTGGGAG AGATCGGCGA GTCGCTGCGG GAGGGCGGGG ATCAGGGACA GCGGCGCAGC GGCAAGCGCG GCGCGCTGGT GCGTGCCGAC GAATCGTTGA ATGCGCTGGT GATCCTCGCC GATCCGCAGG AGGTCGGATT GTTCGAGGAG ATCGTCCGCC AACTCGACGT GCCGCGCGCG CAGTTGCTGG TGGAGGCGGC GATCGTCGAA CTGACCGGCG AACTCAACGA GGCGCTCGGC GTGCAATGGG CCATGCGCGG CGGGCATGCC GTCGGCGGCA CCAGCTTCGC CGGCAGCGGA CTGTCCATCG GCACGCTGCT CGGTGCGCTG CAGAGCGGCA AGCCACCAGC CGAGCTACCG GATGGCGCCA TCGTTGGCCT TGGCAGCCGC GACTTCGGCG CACTGATCAC CGCGCTGACC CGCAACAGCA ACAGCAACCT GCTGTCGACC CCGAGCCTGC TGACCCTGGA CAACCAGAAG GCGGAGATCC TGGTCGGGCA GAATGTACCG TTCCAGACCG GTTCCTACAC CACCAACAGC GAAGGATCGA GCAACCCCTT CACCACTGTC GAGCGCAAGG ACATCGGAGT GACCCTGAAG GTGACCCCGC ATATCGGCGA CGACCGCATG CTGCGCCTGG AAATAGAGCA GGAGATCTCC TCGATCGCGC CAGCGGCCAC GCTGGCGGCC AAGACGGTGG ACCTGGTGAC CAACAAGCGC TCGATCAAGA GCACGGTACT CGCCGACGAC GGCCAGGTGA TCGTGCTTGG CGGGCTGATC CAGGACGACG TGGTGCGCAG CGACTCGCGG GTGCCCCTGC TCGGCGACAT TCCCGGGGTC GGCCGGCTGT TTCGTTCGAC CCGGGACACC CGGGTGAAGC GCAACCTGAT GGTCTTCCTG CGCCCGAGCA TCGTCCGCGA CGCCGTCGGC CTGGCACGGG TCAGCCAGGG CCGCTACCGT TCCATCCAGG TATTGCGCGG CGCCTCGACT CCCTTGTTCG ACGCCGCCCC GGCCATCGAC CTGCGCCCCG CCGCGCAGGC CCTGCCGGCG CTTCCCGAGT CGCCGCGCGG CTACCCGGAT CCGGCCCCGG TGCTGATGGA GAAGCCGCGC CTGGCGGACC CGGCGAGCCT GGGCAACGGC CGTGGCGGCG AGGTGCTGGA GGTGCGCGAG AGCGAGCCCA CGGCGGCGCC AGCGCGGCGT TACACGGTGC GCCTGATCGA GGGTAGCAGC GAGGCGTTCA TGCGGGCGCT GATCGAACGC CACGCGGGGC TAGCCTTGCG CCTGCGCCGC GAGAAGCGCG ACGACGGCGA GTGGTTCGCC GTGGAGCAGG GCGATTTCGC CGATCCGCGG CAGGCGCAGC GGGCCCTGGC CGGATTGCCG GAGAGCCTGC CGCGGGCCAG GGCGCGGGTG GTAGCGCGCA CCCAGGAAAG GCTGTGA
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Protein sequence | MSSLFLLLAL VTPGLAATAH PAPAATAAAQ EEEQWTINMK EAELGDFIEQ VSAISGQTFI VDPRVKGRVT VVSQARLNLA EVYQLFLSVL ATHGYAVLPQ DGQARIVPNM EGRQDAAGGG VHVGPGSLET RVIQARQTSV VELIPMIRPL VPAHGHLAAV PSANALIVSD RRANIERIES IVRSLDQAGE HDYSIYDLRH AWVAEIAEVL DQSVTPAAGK NAATVQVLAD SRSNRLVLLG PPQARARLLR LAQSLDVPSS RSANSRVIRL RHGDAKTIAS TLGEIGESLR EGGDQGQRRS GKRGALVRAD ESLNALVILA DPQEVGLFEE IVRQLDVPRA QLLVEAAIVE LTGELNEALG VQWAMRGGHA VGGTSFAGSG LSIGTLLGAL QSGKPPAELP DGAIVGLGSR DFGALITALT RNSNSNLLST PSLLTLDNQK AEILVGQNVP FQTGSYTTNS EGSSNPFTTV ERKDIGVTLK VTPHIGDDRM LRLEIEQEIS SIAPAATLAA KTVDLVTNKR SIKSTVLADD GQVIVLGGLI QDDVVRSDSR VPLLGDIPGV GRLFRSTRDT RVKRNLMVFL RPSIVRDAVG LARVSQGRYR SIQVLRGAST PLFDAAPAID LRPAAQALPA LPESPRGYPD PAPVLMEKPR LADPASLGNG RGGEVLEVRE SEPTAAPARR YTVRLIEGSS EAFMRALIER HAGLALRLRR EKRDDGEWFA VEQGDFADPR QAQRALAGLP ESLPRARARV VARTQERL
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