| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_1011 |
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| Symbol | truD |
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| ID | 5328463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C7 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009637 |
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| Strand | - |
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| Start bp | 979695 |
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| End bp | 980864 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640793553 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001330229 |
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| Protein GI | 150402935 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA GACAAAAACA CGAAGATTTC ATTGTAAATG AGATTTTAGA GTATGAATTG
GATGATTCTG GAAATTATTC CTTATATAAA CTTCAAAAAA ATGGAATAGA AAATTTAAAA
GCGATATCGT ACCTTTCAAA AAATTTTGAA GTTCCAACAA AAGAAATCGG TTATTGCGGT
TTAAAAGATA GACACGCAAT TACAACGCAG TACGTTTCCA TTCCAAATGA ATATGGTAAA
TTATCTCTCG ACGAAGATAA TTTAAAGCTT GAATATGTCG GAACTATTAA AAAACCGCTA
AAAATTGGAA AATTATACGG AAATCGGTTT GAAATTATCG CAAGGGCTGT TGATAAAAAT
GAATTTTTAA AAATTGCAGA TAATATTCGA GCTTTAAGTT TGGGCGCACC AAATTATTAC
GATGAACAGA GATTTGGAAG TGTATTTAAC GGTAAATTTA TAGCAAAGGA AATTTTGAAG
GGAAATTATG AAGAAGTCGT TAAAATACTT TTAACAAGCT ATACGAAAAG TGAAAAAAAG
CAAATAAAAG ATTTAAAAAG ATTTATCGAT AAAAATTGGG GCAACTGGGA CGAATGCCTA
AAATACATCG ATAAAAAGCA GATAAAAAGT AAAATGTTTA GAAACATGGT AAAATCGCTA
AAATATGAAA ATGATTTTAA AAAATCGTTT AAATATATGG ATAATCGGTT GAAAGAGCTT
TTTATATCTG CATATCAAAG CTACCTCTGG AATGAATGCT TAAAAGAGTT TTTAAAAGAG
ATTATTCCGC AGGAAAATAG AAAATATGTC GATTACTGCT GTGGAACATT TCTGTTTTAT
GAAAATATTG GCGAAGAATT ATTTGATAAA TTGAAAGAAT TGGACTTTCC AACGATAGTT
TCAGATGTGG AATACAGCGA TTCAGAAAAA AAGATAATAA ATGCAATTTT GAAGAAGGAA
CGGATTAAAT TTTCAGATTT TGAAAAAATG GACTTTGGAA AATTAAAATA CACGAAAAGA
CCGATTATTT CAATTCCTGA AGATGTTAAT ACTGGAACGT TCAAATCTGA CGAATTAAAC
CAGAAAAAAT ATAAAATAGC TTTAGAATTT AGTTTAAAGA AGGGAAGCTA TGCAACTATA
ATTTTAAAAA GGGTTTTTAG TATTTTATAA
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| Protein sequence | MKFRQKHEDF IVNEILEYEL DDSGNYSLYK LQKNGIENLK AISYLSKNFE VPTKEIGYCG
LKDRHAITTQ YVSIPNEYGK LSLDEDNLKL EYVGTIKKPL KIGKLYGNRF EIIARAVDKN
EFLKIADNIR ALSLGAPNYY DEQRFGSVFN GKFIAKEILK GNYEEVVKIL LTSYTKSEKK
QIKDLKRFID KNWGNWDECL KYIDKKQIKS KMFRNMVKSL KYENDFKKSF KYMDNRLKEL
FISAYQSYLW NECLKEFLKE IIPQENRKYV DYCCGTFLFY ENIGEELFDK LKELDFPTIV
SDVEYSDSEK KIINAILKKE RIKFSDFEKM DFGKLKYTKR PIISIPEDVN TGTFKSDELN
QKKYKIALEF SLKKGSYATI ILKRVFSIL
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