| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC7_0880 |
|---|
| Symbol | |
|---|
| ID | 5328328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C7 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009637 |
|---|
| Strand | + |
|---|
| Start bp | 847208 |
|---|
| End bp | 848083 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640793410 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001330098 |
|---|
| Protein GI | 150402804 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0027577 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCTG AACGGATAAA TATATTAAAT ACTCATTCGC AAAAGATTTT CAATGAATTT
TTTAAATATA TCCAGCATAA AAGCTTAAGT TACAATAAAA ACCTCAAAAA TATCATTTTA
AACTTTATGG AATTCATAAA AAAGGATTCT TTTATGAATG TTGAAGTTTC AGATGCAATA
TTTTATTACA ATAATAAATC CTGTTCAAAA AACACTAAAT TGTCATATTT AACTTATTTA
AACGTGTTTT TTGACTTTTG TGTGGATAAT AACTATATTG CAAAGAATCC GATTTCAAAA
TATCGAAAAT CAATGAAACC CTCGAAAAAA GAAAGAGTTT ATCTCACAGA AAAACACCAG
GAACTGGTAT TTTCAAGGCT TAAAGATTTT GAATTTCGTT TCATGTACGT GTTTTTAGTC
CAGACAGGAC TTAGAAGGGG CGAATTTTTA AATTTGAAAT TTATTGATGT TGATCTTGAC
GATAGGATAA TTCATGTTAA AGGTGGAAAA GGAGACAAAT ACCGTTTTGT CCCGATATCT
GATGAGCTCT ATATGTACTT AAAAAGATGG AATTATGAAA GAGCATTACG ATACCCTGTT
GATGACAGCT ATTTTGTAAG CAAAAAGGGA AAAAGGCAGA GTAATAAAAT ATATGCTTCA
TTTTCTGAAT ATATCGATAG AGCAGTTCCA AACTTACATA TAAGAGTTAC ACCGCATATT
TTAAGGCATA CATTTGCAAC AAACTGCATA AATAAAAAAA TGGATTTGAA AACACTTTCT
TTGATTTTGG GTCATGAAGA TATTGCAACT ACTTCGATTT ATCTTCATAA AAACAAAGAA
CAGATCAAAA AAGACTTTTT AGAAGCTTTG AGATAA
|
|---|
| Protein sequence | MESERINILN THSQKIFNEF FKYIQHKSLS YNKNLKNIIL NFMEFIKKDS FMNVEVSDAI
FYYNNKSCSK NTKLSYLTYL NVFFDFCVDN NYIAKNPISK YRKSMKPSKK ERVYLTEKHQ
ELVFSRLKDF EFRFMYVFLV QTGLRRGEFL NLKFIDVDLD DRIIHVKGGK GDKYRFVPIS
DELYMYLKRW NYERALRYPV DDSYFVSKKG KRQSNKIYAS FSEYIDRAVP NLHIRVTPHI
LRHTFATNCI NKKMDLKTLS LILGHEDIAT TSIYLHKNKE QIKKDFLEAL R
|
|---|
| |