Gene Smed_3567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3567 
Symbol 
ID5324455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3774565 
End bp3775023 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content62% 
IMG OID640792516 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_001329217 
Protein GI150398750 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00720162 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACGCG ATAGTAGACT TTCCATCACC CTGCATGCGC TGCTTCATAT GGCGGAGCGT 
AAAACCATCA CCTCGGAAGA GCTGGCGGCC TGCCTGTCCA CCAACCCCGT CGTGGTCCGG
CGCACGATGG CCGGTCTGCG GGAAGCGGGG CTGGTGCGCT CTGAAAAGGG GCATGGCGGT
GGCTGGTCGC TCGCCTGCGA CCTCGCAACG GTCAGCCTCG CAGACGTGCA TGCCGCTCTC
GGGGAGCCTG CCTTTTTTGC GATCGGCAAT CGCACCGAGT CCCCCGGCTG CCTGGTGGAA
CAGGCCGTCA ATGCCGCAAT GGACGGGGCG CTCCGGGAAG CCGAGCTTCT CCTCCTCCAG
CGACTGGGAA CGATAAGTCT GGCAGATCTT TCGCGTGATT TTCAGCAACG GATGGCGCTC
GGTCGCCAGA AAACGAAGGA GCAAAATCAT GTCGGTTGA
 
Protein sequence
MKRDSRLSIT LHALLHMAER KTITSEELAA CLSTNPVVVR RTMAGLREAG LVRSEKGHGG 
GWSLACDLAT VSLADVHAAL GEPAFFAIGN RTESPGCLVE QAVNAAMDGA LREAELLLLQ
RLGTISLADL SRDFQQRMAL GRQKTKEQNH VG