Gene Smed_3552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3552 
Symbol 
ID5324440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3757797 
End bp3758705 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content62% 
IMG OID640792501 
Producthypothetical protein 
Protein accessionYP_001329202 
Protein GI150398735 
COG category[R] General function prediction only 
COG ID[COG2962] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.963369 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAGGG ATTTGCGACG CGGAAGCGTG GAAATGACGG CTGCCATGCT GATTTCGGGA 
ACGATCGGCT GGTTTGTGCT GATGTCGGGG CAGCCTGTGG CGGGTGTCGT CTTCTGGCGT
TGCGTGTTCG GCGCCGCGAC GCTTGCCGTG CTTGCGGCAT TTTTCGGCCT CATCGACCTC
AAGCACCTGC GGATGAAGGT CATCTTGCTT TCGGCGTTGG GCGGCGTCGC GATCGTCCTG
AACTGGCTAC TGCTCTTCGC CGCCTATCCC CGCGCTTCTA TCTCCATTGC CACGATGGTC
TACAACACGC AGCCCTTCAT GCTGCTCGGG CTTGGTGCGA TCTTTCTCGG AGAGAAGATC
ACCGCCAGCA AGCTTCTATG GCTCTCGCTC TCCTTCGCAG GCATGGTCGC GATTGTCTCC
GCCGAGCCCG CGGGTGGCTA CGAGCCAGTC GATTATCTCA CCGGAATAGC ACTGTCGCTC
GGTGCCGCAT TCTTCTATGC CATCGCTGCG CTCGTCACCA AGCTCCTCAA GGGCACGCCG
CCGCATCTGA TCGCGCTGGT ACAGGTCATA ACCGGAGCGG CCATGCTCGC TCCCTTCGCC
CTTGCCGCGC CGCTGCCGCA GGGAACGCTC CAGTGGACGC TCCTCTTGAC CGTGGGGGTG
GTCCACACGG GCATCATGTA TATCCTGCTT TACGGCGCCA TTCAGAAGCT GCCGACCCAC
ATGACGGGCG CCCTTTCCTT CATCTATCCG ATCGCTGCGA TCCTGGTCGA CCGCATCGCA
TTCGGCCACG CCTTACAGCC GGCGCAGATC GCAGGCTCGA TCGCGATCCT CATTGCAGCC
GCGGGCACAA ATCTCGGCTG GACCCTCCGG CCACCGTCGG CCAAGCGTGG ATTGAAACGG
CAAGCCTAA
 
Protein sequence
MDRDLRRGSV EMTAAMLISG TIGWFVLMSG QPVAGVVFWR CVFGAATLAV LAAFFGLIDL 
KHLRMKVILL SALGGVAIVL NWLLLFAAYP RASISIATMV YNTQPFMLLG LGAIFLGEKI
TASKLLWLSL SFAGMVAIVS AEPAGGYEPV DYLTGIALSL GAAFFYAIAA LVTKLLKGTP
PHLIALVQVI TGAAMLAPFA LAAPLPQGTL QWTLLLTVGV VHTGIMYILL YGAIQKLPTH
MTGALSFIYP IAAILVDRIA FGHALQPAQI AGSIAILIAA AGTNLGWTLR PPSAKRGLKR
QA