| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3352 |
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| Symbol | |
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| ID | 5324236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3550348 |
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| End bp | 3551922 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640792303 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001329008 |
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| Protein GI | 150398541 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.78669 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTGGCTCT CCAGAATCAG AAGTAGGACG GGGCGCAAGG TGAAACGGAT CGAAAACAGG
TTTCGGGCGT CTCTCGCAGC CGGCTTCTCC TTCTGGCTGA TTTTCTCGGG CATGGCGCTG
CCGACGGCTG CTCCGGCCGA GGCCGCGTCC TCCTCGGTCG TGCGGATCGT CAATAGTGGC
CCGGGCGCCC GCAAGACCAT CAACCTCGGC CTCAACAAGG CGGTCGTCGT CGATCTGCCG
AGCGACGCCC ATGACATTCT CGTCGCCGAT CCGTCGCTCG CCGACGCGAT CACCCGCACC
TCCCGCCGCA TCTATCTCTT CGGCAAGTCC GTCGGCCAGA CGAATATCTT CGTCTTCGGT
CCGGGAGGCG AGGAGATCGT CAGCCTTGAG GTTGCCGTGG AGCGTGACGT CGCGGGCCTG
GAGTCGAACC TCCGCCGCTT CATTCCCGAT GCCGACATCA AGGTCGAGAT CATCTCGGAC
AACGTGGTGT TGACGGGCAC GGTGCGCACG CCGCTCGACT CGACCAGGGC TGTCGATCTT
GCGCGCGCTT TCCTCAAGGG CGGCGAAGCG ACCACACGCA ATATCACGGC TCAGGGCAAT
AACGGTGATG CGGATATCTT CGCCGAAGAC CGCCAGAGCT CGCAGATCGT CAATCTCCTG
ACCATCGAGG GCGACGATCA GGTGACGCTG AAGGTGACTG TGGCAGAGGT CAGCCGGCAG
GTGCTGAAGC AGCTCGGATT CAACGGCCGC GTATCGGACG GCGAAAGCGG CATCAGCTTC
CGCAACCCGG CAAATCTGGG CGATATGATC GGCATCGGCA CGAACGCCCT CATCAAGGGT
TCGATCGGCG GCACCACCAT TTCGAGCTAC ATCAACGCGA TGGAGCAGGC GGGCGTCATG
CGCACGCTCG CCGAGCCGAG CCTCACGGCT ATTTCCGGCC AGGAGGCGAA GTTCTATGTC
GGCGGCGAAT TCCGGCTGGC CGGCGTGCAG GAAGTTTCAA CTGACGACGA CAGCGGCGAA
ACCACGGTCG AGCGGGAGGT GAACGACGTC GAGTATGGTA TCAGGCTGAA CTTCAAGCCG
GTCGTCCTCG GCCCCGGCCG CATCAGCCTG CAGATCGAGA CCGATGTTTC CGAGCCGACC
TATGAGGGTT CGGTCGTCAC CGGCAACGGT ACGGTCAATA TTCCGGGCAA TACCTTCCTC
GGCATTCGCC GGCGCGAGGC CTCTACCAGC GTCGAACTTC CGTCCGGCGG TTCGATCGTC
ATCGCCGGTC TCGTGCAGGA CAATATCCGC CAGGCGATGT CGGGTCTGCC CGCCGCCTCG
AAGATCCCGA TCCTCGGCAC GCTCTTCCGC AGCAAGGATT TCCAGCGAAG CGAGACGGAG
CTCGTCATCA TCGCCACACC CTATCTCGTG CGGCCGGTGG CCCGCAGCGC GATCTCGCGT
CCGGACGACA ATTTCAATCC GGCCAACGAT CTCGAAAGCT TTTTCCTGGG CCGCGTCAAC
CGGATCTATG GGCGCGCCGA GGCACAGCCG CCCGCCGGCC GTTACCACGG CAATGTCGGC
TTCATCTACA AATAG
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| Protein sequence | MWLSRIRSRT GRKVKRIENR FRASLAAGFS FWLIFSGMAL PTAAPAEAAS SSVVRIVNSG
PGARKTINLG LNKAVVVDLP SDAHDILVAD PSLADAITRT SRRIYLFGKS VGQTNIFVFG
PGGEEIVSLE VAVERDVAGL ESNLRRFIPD ADIKVEIISD NVVLTGTVRT PLDSTRAVDL
ARAFLKGGEA TTRNITAQGN NGDADIFAED RQSSQIVNLL TIEGDDQVTL KVTVAEVSRQ
VLKQLGFNGR VSDGESGISF RNPANLGDMI GIGTNALIKG SIGGTTISSY INAMEQAGVM
RTLAEPSLTA ISGQEAKFYV GGEFRLAGVQ EVSTDDDSGE TTVEREVNDV EYGIRLNFKP
VVLGPGRISL QIETDVSEPT YEGSVVTGNG TVNIPGNTFL GIRRREASTS VELPSGGSIV
IAGLVQDNIR QAMSGLPAAS KIPILGTLFR SKDFQRSETE LVIIATPYLV RPVARSAISR
PDDNFNPAND LESFFLGRVN RIYGRAEAQP PAGRYHGNVG FIYK
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