Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3351 |
Symbol | |
ID | 5324235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3549564 |
End bp | 3550373 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640792302 |
Product | SAF domain-containing protein |
Protein accession | YP_001329007 |
Protein GI | 150398540 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGG TGCGCATTAT CATTCTGGCC GTGGCGGTCG GCTCGGCTGC CATGGCCGGG CTGCTGGCGA TGAAGCTTAC CCGCGCGCCC GCCGCCCGAA TGGCGGAACC GGTCATCGAG CAGGCGCCGA CGATCAACGT GCTCGTTGCC GGCAAGAGCC TGCCCGTCGG CTCCCGTCTC GGCGCCGATT CCATTCACTG GAAAGCCTGG CCGAAGGACG GCATCGCCGA AGGCATGATT ACAGAGGAAA CACGTCCCTC TGCCGTCGAC GACCTTGCCG GCGCGGTCGT CCGCCTGCCG ATCTTCACCG GGGAGCCGGT CCGTCAGGAA AAGATCGCCG ATGCATCGAA CCGGATCATG TCGTCGCTGT TGCCGGCCGG AAAGCGGGCG GTGGCGACGG AAATCACGGT CGCGACCGGT GCGGGCGGAT TCATCCTGCC GAACGATCGC GTCGACGTCA TCATGGTGCG CAAGTCCGAC GGCGATCTCT ATCTGACGGA AACCGTCCTC AGCAATGTGC GCGTGCTCGC GATCGACCAG CAGATCGAGG AGAAGGAGGA CGGCACAAAG GCCGTCGTCG GCACGACTGC GACGCTGGAA CTCACGCCGG ATCAGTCGAA AGTCATGACG GTGACGCAGC AGATGGCGGA CCGCATCTCG CTGGCGCTCC GCAGCGTCGC CGACGCGCAG GAGCCGGACA CCACGGCTGC CGACCACCTT CTCAACGGCG ACGGCCAACC AAGCATTCAG GTCATCAAGT CGGGCTCCAT CGTCAAGGGC GACGGTGTGG CTCTCCAGAA TCAGAAGTAG
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Protein sequence | MKPVRIIILA VAVGSAAMAG LLAMKLTRAP AARMAEPVIE QAPTINVLVA GKSLPVGSRL GADSIHWKAW PKDGIAEGMI TEETRPSAVD DLAGAVVRLP IFTGEPVRQE KIADASNRIM SSLLPAGKRA VATEITVATG AGGFILPNDR VDVIMVRKSD GDLYLTETVL SNVRVLAIDQ QIEEKEDGTK AVVGTTATLE LTPDQSKVMT VTQQMADRIS LALRSVADAQ EPDTTAADHL LNGDGQPSIQ VIKSGSIVKG DGVALQNQK
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