| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3205 |
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| Symbol | trmE |
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| ID | 5324084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3379862 |
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| End bp | 3381184 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640792153 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001328864 |
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| Protein GI | 150398397 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTCA CCGATACGAT CTACGCGCTG TCGAGCGGCT CGCCACCGGC TGGGGTCGCA
TTGATCCGCG TCAGTGGTCC GGCAACAGCC GACGCCCTGG CGCGATTGTG TGGCCCACTG
CCGCCGGCGC GTGTTGCGAC CTTGAGAACG ATTCGGACTC GAAACAGTGA CATCCTGGAC
AGCGGCCTCG TCCTCTACTT CCCCGGTCCG GCCTCTTTCA CAGGTGAGGA TTGCTGCGAG
TTGCAGGTTC ACGGCGGAAG AGCCGTGGTG AGTGCCATTC TGGACGAGCT GGCCGCGATG
GATGGGCTGA GGCATGCGGA AGCGGGAGAA TTTGCGCGGC GAGCTTTTCA GAACGGCAAG
CTGGATCTGG TCGAAGTGGA GGGACTGGCG GATCTGATTG CGGCCGAGAC GGAGATGCAG
CGGCGACTTG CGGTTGAGCA GTCCGGAGGA GGCCAGTCGG CTCTTTACGC GGGCTGGGCC
CGACGCCTGA CCCATGCACG GGCCATGATC GAGGCGGAGC TCGATTTCGC CGACGAGGAC
GATATTCCGG GTTCCGTCAG TGCGGCGATC TGGACCGATA TCGGCAGGCT GCGAGAAGAG
ATAGATGAGC ACATCGCCCG CGCTGGTGTC GCCGAGATCA TTCGTGACGG GCTCAAAATC
GTTATTGCCG GCGAACCCAA TGCCGGCAAG TCCAGCCTGC TCAACGCTTT GGCGCAAAGG
GATATAGCTA TCGTTACGGA GATTGCCGGC ACGACACGGG ATGTTCTGTC TGTCGACCTT
TCGTTAGCCG GATTCTCAGT CAAGCTCTTC GACACGGCAG GCCTGCGCGA AACGGATGAA
GTGGTTGAGC GGGAAGGGAT TCGGCGTGCC CGCCAGGTTA TCGCCGATGC CGATCTTGTG
CTCCTGCTAT CGGAAAAGCC GAGTGATTTC CGCTTGGACG AATGGCAGCC GGGAAAGAGT
GTCCCGGTTA TACGCGTCGC TACCAAAGTT GATCGGCCGA TGCCGCGTTG GAAGACTTCC
GAGGCGGACG TGTTTCTCTC GACCAGAACC GGCGAGGGTA TGGATAAGTT GCTGGCTATG
CTTCAGGCAC ATCTCCCTGA TCTGGCGGGC AATACGGCCC TGTCCATGCC ATCGCGGAGG
CGTCATGTCG ATTGCTTGCG GCAGGCCGGC GCAGCGCTGG TGCGTAGCAT GGAGGCCAGA
GAGCTCGAAC TTCAGGCTGA ACAGCTACGG CAAGCCGGTG ACGCGCTGGG CAGAATAACA
GGACGCGTCG ATGTAGAGAA ACTTTTAGAC GTGATATTCT CGGAGTTCTG CATCGGAAAA
TAG
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| Protein sequence | MQFTDTIYAL SSGSPPAGVA LIRVSGPATA DALARLCGPL PPARVATLRT IRTRNSDILD
SGLVLYFPGP ASFTGEDCCE LQVHGGRAVV SAILDELAAM DGLRHAEAGE FARRAFQNGK
LDLVEVEGLA DLIAAETEMQ RRLAVEQSGG GQSALYAGWA RRLTHARAMI EAELDFADED
DIPGSVSAAI WTDIGRLREE IDEHIARAGV AEIIRDGLKI VIAGEPNAGK SSLLNALAQR
DIAIVTEIAG TTRDVLSVDL SLAGFSVKLF DTAGLRETDE VVEREGIRRA RQVIADADLV
LLLSEKPSDF RLDEWQPGKS VPVIRVATKV DRPMPRWKTS EADVFLSTRT GEGMDKLLAM
LQAHLPDLAG NTALSMPSRR RHVDCLRQAG AALVRSMEAR ELELQAEQLR QAGDALGRIT
GRVDVEKLLD VIFSEFCIGK
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