| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3200 |
|---|
| Symbol | holA |
|---|
| ID | 5324079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3374425 |
|---|
| End bp | 3375456 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640792148 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001328859 |
|---|
| Protein GI | 150398392 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA TAAAGTCGCA CGAGTTCGAC AACTTTCTGC AGCGATCTGC GGCGGGCTAC
CGGCTTTTCC TGCTCTACGG TCCGGACCGA GGACTTGTGT CCGAACGCGC AACAGCGCTC
GCCGAAACTT TCGGGATCCC TCTCGACGAT CCTTTTGCCG TCGTCAAAAT GGATGCCACG
GGATTGCAGG GTGCCGGAAG CCTCCTTGAC GAAGTGAATG CAATCGGCCT CTTCGGCGGC
GAGAAACTGG TGTGGATGCG TGGCGCCTCC ACGGAGAAGG CGCTCATCGA CGCCCTGCAG
TTTCTCGCGT CAGATCCCCC TGTCGGCGCC CGTCTCATCG TCGAAGCGGG AGATCTGAAG
AAGGGAGCGG CGCTGAGGAA GGTTGGCGAG TCTTCCCGTT CCGTCGCCTC AATCGCCTGC
TACAGCGACG ACGCCCGTGG CCTGCAAGCC CTTATAGACA AAGAACTTTC CGATGCGGGC
CTGCGCATCA GCCCGGCCGG GCGCGAGCGC CTCATGGACG CGCTCGGCGG CGACCGCATG
GCCTCGCGCA ACGAGCTTCG CAAGCTAGCT CTCTATTGTC TCGGCAAGGA TATGGTCGAC
GAGGTCGACG TCCTTGGGAT CGTGGGCGAC GCCAGCGCCA TCTCGGTGGA CGATGCGGTC
GATGCGGTGC TGAAGGGCGA TCCTGACGCG CTGTTGCATG CTATGAAGAA AATAACCACG
TCCAAGACGC CGCCGTTTCT CGTGCTTCAG GCTTGTCTCA GGCAGTTCCA GCAGCTCGAC
GTCATGCGCG CCGAAATGGA TGCGAACCGC CAGCCTCCGG CCCAGGTGGT CGCGACCCTC
GGGCGCGGCC TGCATTTCCG CCGCAAGCCG GTGGTCGAGG CGGCGTTGAA GCACTGGACC
GCACCGGCGA TCCGGCGCGA ATTGAGCCGC CTGCAATCAA CGATCTACCA AAGCCGCAGC
CGCCAGAGCC TCGAGGAGAG CCTTGTGATA CAGAATTTGC TGGCGATTAC GATCCAGTCG
GCTCGGCGCT GA
|
|---|
| Protein sequence | MSEIKSHEFD NFLQRSAAGY RLFLLYGPDR GLVSERATAL AETFGIPLDD PFAVVKMDAT
GLQGAGSLLD EVNAIGLFGG EKLVWMRGAS TEKALIDALQ FLASDPPVGA RLIVEAGDLK
KGAALRKVGE SSRSVASIAC YSDDARGLQA LIDKELSDAG LRISPAGRER LMDALGGDRM
ASRNELRKLA LYCLGKDMVD EVDVLGIVGD ASAISVDDAV DAVLKGDPDA LLHAMKKITT
SKTPPFLVLQ ACLRQFQQLD VMRAEMDANR QPPAQVVATL GRGLHFRRKP VVEAALKHWT
APAIRRELSR LQSTIYQSRS RQSLEESLVI QNLLAITIQS ARR
|
|---|
| |