Gene Smed_3172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3172 
Symbol 
ID5324051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3334795 
End bp3335574 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content65% 
IMG OID640792120 
Productenoyl-CoA hydratase/isomerase 
Protein accessionYP_001328831 
Protein GI150398364 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGACG AACGAATCCG TCTCGATTTC GACGGTCCGA TCGCGACCCT GACGGTTTCG 
CGGCCGGAAA AGCTCAATGC CTTCGACATC GACATGCTGA GAGCGCTCAG CGCAGCCTGC
GATACCGTGG AGGCGAAACG CGACGTGCGC GTTATCATCC TTACCGGCGA GGGCAAGGCC
TTTTCCGCCG GTGGCGACAT CAAGGCCTGG GGCGGCATGG AGCCAGCCTC CTTCGGCCAT
GACTGGGTTC GGTTCGGTCA CCGTGTTTTC GAGCGGCTCG CCACGCTGCG CATGCCGGTC
GTCGCTGCGC TCAACGGCCA CGCGCTCGGC GGCGGTCTGG AACTGGCGGC GGCGGCGGAT
ATTCGCCTGG CCGAAAAACA TGTGAAGATC GGCCTGCCGG AGACGAGCCT CGGCATGGTT
CCCGGCTGGT CCGGTACGCA ACGCCTGGTG GCCCGGTTCG GCGCGCAGAT CGTCCGCCGC
ATGGTGCTTG GCGGCGAGAT GTTCACGGCG GCACAAGCCG AGGCCGAAGG GCTGGTCGAC
GCCGTCGTCG AGACCGGCAC GGTCATGCAC GCAGCGCTTG ATTATGGCAG GCGGATCGCC
AGCCGCGGCC CCGCGGCACT GGAAATATCG AAACTGATGA TCGCCTCGGC AAGCGGCGAG
GACAAGGGCG CGGCGGTGGA AGCGCTGGGT TCGATTCTCG TCGCCAAGAC CGGCGATCTC
AAGGAAGGCG TGGCGGCTTT CAGTGAAAAG CGCGAAGCAT GCTTCAAGGG AGAATGGTGA
 
Protein sequence
MADERIRLDF DGPIATLTVS RPEKLNAFDI DMLRALSAAC DTVEAKRDVR VIILTGEGKA 
FSAGGDIKAW GGMEPASFGH DWVRFGHRVF ERLATLRMPV VAALNGHALG GGLELAAAAD
IRLAEKHVKI GLPETSLGMV PGWSGTQRLV ARFGAQIVRR MVLGGEMFTA AQAEAEGLVD
AVVETGTVMH AALDYGRRIA SRGPAALEIS KLMIASASGE DKGAAVEALG SILVAKTGDL
KEGVAAFSEK REACFKGEW