| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3168 |
|---|
| Symbol | |
|---|
| ID | 5324047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3329970 |
|---|
| End bp | 3330851 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640792116 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001328827 |
|---|
| Protein GI | 150398360 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCTC CCAGTCCCGA GAACGTCATC TCGCACAACC GCCTGACGCG GGCGCTGATC
TATTCGGCGC TGATCCTTTT CGCACTCTAT TCGTTGCTGC CGCTTTACGT GATGGTGGTG
AATTCCCTGA AGCCCCTCGA AGAGATCCGT CAGGGCGGCA TGTTGAACCT GCCCCGGACC
TGGACCATCG AACCGTGGCT CTCCGCGTGG TCGACGGCGC AGATCGGCGT TGAGCCGACG
GGCCTTCGCC CCTTCTTCAT CAACTCGATC CTGATGGTCG TTCCGGCCGT GGCGATCTCA
ACGATAATCG GCGCGCTTAA CGGCTATGTA CTGACCAAGT GGCGGTTCCC CGGCGCCAAC
ATCGTCTTCG GCATGCTGCT TCTTTCCTGC TTCATCCCGT TCCAGATCGT CCTGATCCCG
ATGGCGCGGA TTCTCGGTAT CCTCGGTATC GCCGGTTCGA TCTGGGGTCT GATCCTCGTC
CATGTGGTCT ACGGCATCGG CTTCACGACG CTCTATTTCC GCAACTACTA TGAGGCCTTT
CCAACCGAGC TCGTGCGGGC GGCGCAGATC GATGGTGCGA GCTTCTTCCA GATTTTCCGG
CGGATCCTGC TGCCGTCTTC GGGGCCGATC ATCGTCGTCT CGGTCATCTG GCAGTTCACC
AATATCTGGA ACGATTTCCT GTTCGGCGCC TCGTTCTCCG GTCCTTATTC GACGCCCATG
ACGGTGGCGC TCAACAACCT CGTGAGCTCG TCGACAGGCG TCAAGGAATA CAACGTCCAT
TTCGCCGGTG CGATCCTCGC CGCTCTGCCA ACGCTCATCG TCTACATCGT ATCCGGCCGC
TACTTCGTCC GCGGGCTGAT GTCCGGCGCC GTGAAAGGAT AA
|
|---|
| Protein sequence | MGAPSPENVI SHNRLTRALI YSALILFALY SLLPLYVMVV NSLKPLEEIR QGGMLNLPRT
WTIEPWLSAW STAQIGVEPT GLRPFFINSI LMVVPAVAIS TIIGALNGYV LTKWRFPGAN
IVFGMLLLSC FIPFQIVLIP MARILGILGI AGSIWGLILV HVVYGIGFTT LYFRNYYEAF
PTELVRAAQI DGASFFQIFR RILLPSSGPI IVVSVIWQFT NIWNDFLFGA SFSGPYSTPM
TVALNNLVSS STGVKEYNVH FAGAILAALP TLIVYIVSGR YFVRGLMSGA VKG
|
|---|
| |