Gene Smed_3100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3100 
Symbol 
ID5323979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3245790 
End bp3246536 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content65% 
IMG OID640792050 
Producthypothetical protein 
Protein accessionYP_001328761 
Protein GI150398294 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.261022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.759008 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTAT TCCAGATCTT CTTGCTCTTC GTTGCAGGGT TCCTGTCCGG CGTGGTCAAC 
GCTATTGCCG GCGGCGGCAC CTTCCTGACT TTCGGCGCCA TGACGCTTGC AGGCCTGCCG
CCTATCGTTG CCAACGCCAC TTCCTCCATC ATTCAGTTCC CCGGCTACAT CACCTCGGCG
CTTGCCTATG CCAAGGAAAT CCGGGCCGAC CGGAAGAACG CGCTCGTCCT CGCCGTCATC
TCGGCGGTCG GAGGTCTTGC CGGCGCGCTG CTTCTCCTGT CGCTCTCCAA TCCGGCTTTT
CGTCAGATGG TGCCCTGGCT GCTGATCGCC GCGACAGCGA TCTTCGCGGC CGGTCCGCTG
CTGAAGCCGA AGGCGCGCAG CGACGAGCAC CGCATCGGGC CGCTCGGTGT GGCGAGCCAG
TTGGTCACCT CCGTCTATGG CGGCTTCTTC GGCGCCGGCA TGGGGATCAT GATGCTTGCC
GTTCTCGGGC TTGCGACCGG CGGCGGCTAC CACCGGCTGA ACGCGCTCAA GAACTTCATC
TCCATCATCA TCGCCGCGAT CGCGATCGTG GTTTTCACCG CGGGCGGGGT CGTCTCCTGG
CTGCATGCGG CGATCATGGT GCCGGGCGCA GCCCTCGGCG GCTATATGGG CGTATGGGCG
GCACGCCGCG TTCCGCAGTC GGTGATACGC GCCGTGGTCG TGGCAGTGGG GCTCCTGCTG
GCCGCCTATT ACTTCTTCAC GGGTTGA
 
Protein sequence
MTLFQIFLLF VAGFLSGVVN AIAGGGTFLT FGAMTLAGLP PIVANATSSI IQFPGYITSA 
LAYAKEIRAD RKNALVLAVI SAVGGLAGAL LLLSLSNPAF RQMVPWLLIA ATAIFAAGPL
LKPKARSDEH RIGPLGVASQ LVTSVYGGFF GAGMGIMMLA VLGLATGGGY HRLNALKNFI
SIIIAAIAIV VFTAGGVVSW LHAAIMVPGA ALGGYMGVWA ARRVPQSVIR AVVVAVGLLL
AAYYFFTG