| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3075 |
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| Symbol | |
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| ID | 5323954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3222244 |
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| End bp | 3224835 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640792025 |
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| Product | hypothetical protein |
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| Protein accession | YP_001328736 |
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| Protein GI | 150398269 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGG CAGCTGCCGT CCGACGCACT CGCCCCCTGT TTGCGCTTCG CCCCCTCTTC
GCACTTCGCC CCCTCTTCGC ACTTCGATTG GCGCTCAGGG AAATGCGTGG AGGTCTGAAG
GGCTTTTACA TTTTCCTCGC CTGTATCGCC CTCGGCACGG CGGCGATTGC CGGAGTCAAC
TCGCTATCGC AATCGATCAG CGAAACGATT GCCTCGCGGG GGCAGGAACT GCTCGCCGGC
GACATCCGCT TCGAGCTCAA CAATCGCGTG GCGACGGCGG ATGAGCGCGC CTTCCTCCAG
GGGCTGGGCG ATGTCTCGGT GTCCGCGGGG CTGCGCTCCA TGGCACGTCT TCCGGACGGC
TCCAACCAGG CGCTCGTCGA GCTCAAGGCC GTTGATGGCG CCTATCCGCT CTATGGCAAG
CTGGAAAGCG ATCCGGCAAA GCCGGTCCCT GAACTGCTGG CGAAGGAAGG TGAGATCTTC
GGGGCAATCG CCGCGCCGCT GCTGCTTGAG CGCCTCGGCG TCACGCCTGG CGCGGAAATC
TTCATCGGCA ATGCACGCGT CCGGATCAGC GCCTCCCTTG TCAGCGAACC CGACGCTCTT
TCCGACGGCT TCGGTTTCGC GCCGCGGCTG ATGATTTCCT CGGAGGCGCT TGTCGCTTCG
GGGCTCGTGC AGACCGGCAG CCTCGTCGAA CATACCTACA AGATCCGCCT GCCCGACCCC
GCGGACGTGC CCGTCATTCG CGCCCAGGCG GAGACGCGCT TTCCCTCCGC CGGCTGGTCT
ATCCGGACGA GCGGCAATGC CGCACCGTCT CTGAACGCGA ACATCACCCG ATTCTCCCAA
TTTCTGACGC TCGTCGGGCT CACGGCGCTG ATCGTCGGCG GCGTCGGCGT GGCCAATGCC
GTGCGCTCCT ATCTCGACGG CAAACGCAGC GTCATCGCCA CTTTCAAGTG CCTCGGCGCT
CCGGCATCGC TAGTCGCGAT GATCTATCTT TCGCAGATCC TGATGATCGC CCTTGTCGGT
ATCGGCATCG GCATCGCCAT CGGTGCCTTC ATCCCCTTCG TGGCGGCGCA GTTTCTCGCC
GGCGTGCTGC CAGTCTCCAC CGCATTCGAG CTCTACCCTT CGGCTCTGGG CCTTGCGGCA
CTTTTCGGCC TCCTGACGGC CCTTACCTTC GCCATTCTGC CGCTTGGGCG AGCACGCCGG
GTGCCGGCCA CCGCACTTTT CCGGCAGCAG GGATTCGAAC CTACGGGCTT TCCCCCGCTG
GCCTATCTCA CCGGAGCCTT CATCTGCCTG GCGGCACTTG CCGGGCTTGC TGTCTGGACT
GCCTATGACC AGTACATTTC ACTGGTCTTC CTCGGCGCGA TCGCCTTTGC CTTCATCGTG
CTGCGCGGCG TTTCGCTCCT GATATCGTGG CTCGCGCGGC GCAGCCCGCG CGTCCATTCG
CCGGCTCTGC GATTGGCCAT CGGCAATATT CATCGGCCGG GGGCACTGAC ACCATCCGTG
GTATTGTCGC TTGGCCTCGG CCTGGCCCTT CTGGTGACCC TGGCGCTGAT CGACGGCAAT
CTCAGGCGTG AGCTCACCGG CGACATGGCC GAGCGCGCTC CCAACTTCTT CTTCGTCGAC
ATTCAGAGCA GCGAGATCGA AGGCTTCCGT TCCCTGCTCG CGGGAGCAAT GCCGGAGGGC
AAGATCATCG AGGTGCCTAT GCTGCGCGGG CGCATCGTGG CGCTCAACGG CGAAGATGTG
AACAGCCGCA ACGTTCCGCC GGGAGGGCAA TGGGTGCTGC GCGGCGACCG TGGCATCACC
TACGCCAGGA ACAGGCCCGA AAACTCGAAG CTCACCGAAG GCAGCTGGTG GCCGGAGGAC
TATGGCGGCG AGCCCCTCGT CTCCTTCTCG GCCGAGGAGG CCCGCGAACT CGGGTTGAAG
CTCGGCGATA CGGTGACCGT CAACGTACTC GGCCGCAACA TCACGGCAAG AATCTCGAAT
TTCCGCGAAG TCGAATGGGA ATCGCTGTCG ATCAATTTCG TCATGGTCTT CTCGCCGAAT
ACCTTTGCCG GCGCCCCGCA TGCCTGGCTC GCGACGATTA TCGATCCCGA CGCCTCCGCG
CAGGAGGAGG CGGCGGTCTT GAAGACGGTG ACCAATACCT ATCCCACCAT CACGAGCGTG
CGCGTCAAGG ACGCGCTCGA TATCGTCAAC ACTCTGCTCG GACAGCTTGC AACGGCAGTT
AGAGCCGCTG CGGCGGTCGC GCTGGTCGCG TCCATCCTCG TGCTCGCCGG TGCACTTGCT
GCCGGCAATC GTGCCCGGAT CCATGATGCG GTCGTCCTGA AGACACTCGG CGCCACACGG
GCCACGCTCA TCCGCGCCTT CAGCTACGAA TACATCATCC TCGGCCTGGC GACGGCGGTG
TTCGCACTGT TCGCCGGTGG CGTTTCGGCC TGGTTCGTCG TCAGTCGCAT CATGACCCTG
CCCTCGAGCT TCCTGCCGGA CGTCGCGATT GCGACGATCA TCCTGGCGCT GGTCGTGACG
GTGGGGATTG GCCTTGCCGG CACCTGGCGC GTCCTCGGGC AAAAAGCCGC TCCGGTGCTA
CGGGAACTTT GA
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| Protein sequence | MSEAAAVRRT RPLFALRPLF ALRPLFALRL ALREMRGGLK GFYIFLACIA LGTAAIAGVN
SLSQSISETI ASRGQELLAG DIRFELNNRV ATADERAFLQ GLGDVSVSAG LRSMARLPDG
SNQALVELKA VDGAYPLYGK LESDPAKPVP ELLAKEGEIF GAIAAPLLLE RLGVTPGAEI
FIGNARVRIS ASLVSEPDAL SDGFGFAPRL MISSEALVAS GLVQTGSLVE HTYKIRLPDP
ADVPVIRAQA ETRFPSAGWS IRTSGNAAPS LNANITRFSQ FLTLVGLTAL IVGGVGVANA
VRSYLDGKRS VIATFKCLGA PASLVAMIYL SQILMIALVG IGIGIAIGAF IPFVAAQFLA
GVLPVSTAFE LYPSALGLAA LFGLLTALTF AILPLGRARR VPATALFRQQ GFEPTGFPPL
AYLTGAFICL AALAGLAVWT AYDQYISLVF LGAIAFAFIV LRGVSLLISW LARRSPRVHS
PALRLAIGNI HRPGALTPSV VLSLGLGLAL LVTLALIDGN LRRELTGDMA ERAPNFFFVD
IQSSEIEGFR SLLAGAMPEG KIIEVPMLRG RIVALNGEDV NSRNVPPGGQ WVLRGDRGIT
YARNRPENSK LTEGSWWPED YGGEPLVSFS AEEARELGLK LGDTVTVNVL GRNITARISN
FREVEWESLS INFVMVFSPN TFAGAPHAWL ATIIDPDASA QEEAAVLKTV TNTYPTITSV
RVKDALDIVN TLLGQLATAV RAAAAVALVA SILVLAGALA AGNRARIHDA VVLKTLGATR
ATLIRAFSYE YIILGLATAV FALFAGGVSA WFVVSRIMTL PSSFLPDVAI ATIILALVVT
VGIGLAGTWR VLGQKAAPVL REL
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