| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2927 |
|---|
| Symbol | |
|---|
| ID | 5323804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3071332 |
|---|
| End bp | 3073536 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640791878 |
|---|
| Product | primosome assembly protein PriA |
|---|
| Protein accession | YP_001328591 |
|---|
| Protein GI | 150398124 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTTG ATTCAACCGA TCTATTCGGC CCCGTACTGG ACCGCCGCGT GGTGCCCGTC
CTCGTGCCCA TGCCGGCGCC GAGGGCCTAT TCCTACGCGG TGCCGGAGGG CATGGCGGTC
GAGCCGGGGT CGATCGTCCA AGTGCCGCTC GGCCCCCGTT TCGTCGTCGG CGTCGTCTGG
GACGGCGAAG ACGACGGCGG CGTCGACCCG AAGAAGCTGA GGGCGATCGA AAAGGTCTTC
GATTGCCCGC CGCTCAGCCC CGAGATGCGC GCCTTTCTCG ATTGGGTTGC TGCCTACACG
CTGACGCCGC CAGGCCTCGT CGCCCGCATG GCCCTGCGGG CGCCTGCGGC TTTCGATCCG
GAGCCGATGG TGGAAGCGCT GCGGCTGACC GACATGAGGC CCGAGCGTAT GACGACGGCG
CGCGAGCGCG TCCTTGCCAG AGCGAGCGAC GGACTATCCT GGACCCGCTC GGGGCTCGCG
CATGCCGCCG GGGTTTCGTC CAGCGTCATC GACGGGCTGG CGTCGCAGGG CGTGTTCGAA
ACCGTCTTCA TGCCGCCGCC ACCCGTCGTC GCGCTACCGG ATCCAGCCTT CGCCGCGCCC
CGCCTCGAAG GACCGCAAAG GCAGGCGGCT GTCGACCTGC TGGCGGCCGT CGAGGAGCGG
AAGTTCTCGG TTTCGCTGAT CGACGGCATT ACCGGCTCCG GCAAGACGGA GGTGTATTTC
GAGGCGATCG CGGCCACGCT GCGCGCCGGC AGACAGGTCC TGATCCTGCT GCCGGAGATC
GCGCTTACCG CAAGCTTTCT CGAACGCTTC CAGGACCGTT TCGGCGCCAA GCCGGCGGAG
TGGCACTCCG ATCTCGCGCC GCGCACGCGG GAGAAGGTCT GGCGGCAGGT GACGACCGGT
CAGGTGCGCG TCGTCGCCGG CGCCCGCTCG GCGTTGTTCC TGCCCTTCGA AGAACTCGGG
CTCATCATCG TCGACGAAGA GCACGACCCC GCATACAAGC AGGAGGACCG CGTTTTCTAC
AACGCGCGCG ACATGGCTGT CGTGCGCGGG CGCATCGGCA ATTTTCCGGT TGTACTCGTC
TCCGCCACGC CTTCCGTCGA GAGCCGGGTA AACGGTGAGA TGGGCCGTTA CCGGCCGATC
CATCTGCCGA CCCGTTACGG CGATGCGGCG CTGCCGGATC TCGGCATAGT CGACATGCGC
CGTCATCCGC CGGAACGCGG CGGCTTCCTC TCGCCGGTGC TCGTGAACCA TATCGGCAAG
ACGATCGGCC GCAGCCAGCA GGCGCTCCTC TTTCTCAATC GGCGCGGCTA CGCACCGCTG
ACGCTCTGCC GTGTCTGCGG CCATCGTTTC CAGTGCCCGG ACTGCTCGAG CTGGCTCGTC
GAGCACCGCT TCCGCGGCCA GATCCAGTGC CATCATTGCG GCTACTCGGA GAGAACCCCT
GAAGCCTGTC CGGAATGCGG CACGCTCGAC CATCTCGTTG CCTGCGGCCC CGGCGTCGAG
CGCATTGCCG AAGAGGTCGA ACGGCACTTT CCGGACGCGC GCACCATCGT GCTTTCCTCC
GACCTGATGG GGGTCAAGCG GCTGCGGCTG GAGCTCGAGG CGATCGCTCG CGGCGAGGCG
GACATCGTCA TCGGCACGCA GCTCGTTGCC AAAGGGCACA ACTTCCCGAA TATGACGCTG
GTCGGCATCG TCGATGCGGA TCTGGGGCTT GCCAATGGCG ACCCGCGCGC GGCCGAACGG
ACATTTCAGC TGCTTTCTCA GGTGACTGGC CGCGCCGGCC GGACGGGCCT CAAGAGCCTC
GGCCTTCTGC AGACCTATCA GCCGCAGCAT CCGGTCATGC AGGCGATCGT GTCGGGCGAT
TCCGATGCTT TCTACCAGCG CGAAATCCAT GAGCGGGAAA GGGCGGCGCT GCCTCCGTTC
GGCCGGCTCG CCTCGATCAT CGTTTCCGCC GACAGCCGCG GCGATGCCGA GGGCCATGCC
CGCGGATTGC GCAACGCGGC GCCGCGCGTC GACGGCATCG CGATCCTCGG ACCGGCGGAA
GCACCGCTCG CGCTCATCCG CGGCCGGCAT CGCTTCCGGC TGCTCGTCCA CGGGCGGCGC
AACAGCGACA TGCAGACTTT CGTCCGGGCG ATGATCGCGG CCGGCCCCAA GGAGCGCGGA
TCGATCAGCG TCCAACTCGA CATCGATCCG CAGAGTTTCC TGTGA
|
|---|
| Protein sequence | MTLDSTDLFG PVLDRRVVPV LVPMPAPRAY SYAVPEGMAV EPGSIVQVPL GPRFVVGVVW
DGEDDGGVDP KKLRAIEKVF DCPPLSPEMR AFLDWVAAYT LTPPGLVARM ALRAPAAFDP
EPMVEALRLT DMRPERMTTA RERVLARASD GLSWTRSGLA HAAGVSSSVI DGLASQGVFE
TVFMPPPPVV ALPDPAFAAP RLEGPQRQAA VDLLAAVEER KFSVSLIDGI TGSGKTEVYF
EAIAATLRAG RQVLILLPEI ALTASFLERF QDRFGAKPAE WHSDLAPRTR EKVWRQVTTG
QVRVVAGARS ALFLPFEELG LIIVDEEHDP AYKQEDRVFY NARDMAVVRG RIGNFPVVLV
SATPSVESRV NGEMGRYRPI HLPTRYGDAA LPDLGIVDMR RHPPERGGFL SPVLVNHIGK
TIGRSQQALL FLNRRGYAPL TLCRVCGHRF QCPDCSSWLV EHRFRGQIQC HHCGYSERTP
EACPECGTLD HLVACGPGVE RIAEEVERHF PDARTIVLSS DLMGVKRLRL ELEAIARGEA
DIVIGTQLVA KGHNFPNMTL VGIVDADLGL ANGDPRAAER TFQLLSQVTG RAGRTGLKSL
GLLQTYQPQH PVMQAIVSGD SDAFYQREIH ERERAALPPF GRLASIIVSA DSRGDAEGHA
RGLRNAAPRV DGIAILGPAE APLALIRGRH RFRLLVHGRR NSDMQTFVRA MIAAGPKERG
SISVQLDIDP QSFL
|
|---|
| |