Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2848 |
Symbol | |
ID | 5323718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2974630 |
End bp | 2975601 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640791793 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001328513 |
Protein GI | 150398046 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.566323 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.619807 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGGTC GTATGATTCT TACATATCCG GATGCAGCGC GGCGTACCGG GACATTTCTC CTGCTCGCGC TGATAACCCT GATGGTCTAC AGCCTGGGCG TAAGCCCCGC CTGGATCGGC ATGGTGCTGC CGACGAGCTC GGAATGGCTG GCCGCCAATC CGGCGCTCGG ACGGCTGGTC AGCGCAGTCA TGATCGCCGT CATCGCGGCC CTGAACTGGA AGGCGCTCCG GCAGCTTCCC CGCCATTGGC AGATTACCGG CGTCTGGCTG GAACTTTTCG TGCTGCTGAT GATCTTCTTC TACTCCTTCA ATCTTTCCTT TGCGTTCATA GCCAAAAAGA TCAGCTTCCT GATTTCACAG GGTGTCGTCA CGACGCTCTA CATTTCGGTG ATCTCGATTG CGGTCGCGAC GGTCATCGCG CTCCTCGGCG CCATCGCAAA ACTGTCGAGA AATGGGGTGA TCTACGGTCT GGCGACCTTC TATACGTCGC TGTTCCGCGG CCTGCCGCTC CTGATGCAGA TCTACATCAT CTATCTCGGT CTGCCGCAGG TCGGTTACGT CATCAGCGCC GTGCCGGCCG GCATCCTTGC ACTTTCGCTC TGCTACGGCG CCTATATGAC CGAAATCTTC CGGGCGGGCA TCGAGAGTAT CCCGCGGGGC CAGTCGGAAG GTGCAACCGC ACTCGGGTTG AGCCCGAGCC AGACGATGGG TCTGGTGATC CTGCCGCAGG CGATGCGCGT GATCATCCCG CCGACCGGAA ACCAGTTCAT CGCGATGCTG AAGGACTCCT CGCTGATCTC CGTCGTGGGC GTCTGGGAAC TGATGTATCT CGCCCGCACA CAGGGACAGA CCGAGTTCCG CCACATCGAA ATGCTGATCA CCGCCTCCAT GATCTACTGG ATCCTTTCGA TCGGGCTCGA ATTCATTCAG TCCCGTATCG AAGCACGGTT CGGGCGTTTC AATGTCCGTT GA
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Protein sequence | MIGRMILTYP DAARRTGTFL LLALITLMVY SLGVSPAWIG MVLPTSSEWL AANPALGRLV SAVMIAVIAA LNWKALRQLP RHWQITGVWL ELFVLLMIFF YSFNLSFAFI AKKISFLISQ GVVTTLYISV ISIAVATVIA LLGAIAKLSR NGVIYGLATF YTSLFRGLPL LMQIYIIYLG LPQVGYVISA VPAGILALSL CYGAYMTEIF RAGIESIPRG QSEGATALGL SPSQTMGLVI LPQAMRVIIP PTGNQFIAML KDSSLISVVG VWELMYLART QGQTEFRHIE MLITASMIYW ILSIGLEFIQ SRIEARFGRF NVR
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