| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2688 |
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| Symbol | |
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| ID | 5323557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2791932 |
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| End bp | 2793383 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791632 |
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| Product | homospermidine synthase |
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| Protein accession | YP_001328353 |
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| Protein GI | 150397886 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.621214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACA CCACCTATCC GGTTTACGGT GAGATCACCG GTCCCATCGT GATGATCGGC
TTCGGTTCGA TCGGTCATGG TACCTTGCCG CTGATCGAGC GCCACTTCAG ATACGACAAG
AGCCGGCTGA TCGTGGTGGA GCCCCGTGAG GACGCCAAGG ACACGGAGAT ATTCGCGCGT
CACGGCGTCC GGCACGTGCG CGCAGCGGTA ACCAAGGACA ACTACAAAGA GCTGCTGAAG
CCGCTTCTGA CCGAAGGCGG CGGCCAGGGC TTCTGCGTCA ATCTCTCGGT CGACACCTCT
TCGCTCGACC TCATCAAGCT TTGCCGCAAG CTGGACGTGC TCTACGTGGA CACGGTCGTC
GAACCCTGGC TGGGTTTCTA CTTCGACGCC GAAAAGGACA ACGCGGCACG CACGAATTAT
GCGTTGCGCG AAACGGTCCG CCGCGAGAAG GAGAAGAACC CGGGCGGCAC GACTGCCGTT
TCGACCTGCG GCGCCAATCC GGGCATGGTT TCCTGGTTCG TCAAAAAGGC CCTGCTCAAC
CTCGCCGACG ATCTCGGCCT GAAATACGAT GAGCCTCACC AGGACGACCG CGATGGCTGG
GCGAAGCTGA TGAAGAAAGC GGGCGTCAAG GGCGTTCATA TCGCCGAGCG CGACACCCAG
CGCGCCAAGC ACCCGAAGCC CCTCAACGTA TTCTGGAACA CCTGGTCCGT CGAAGGTTTC
ATCTCTGAAG GGCTGCAGCC AGCCGAACTC GGCTGGGGCA CCCACGAGAA CTGGATGCCG
AAAAACGCCA AGAAGCACAA AAAGGGCTGC AAGGCGGCGA TCTACCTGGA GCAGCCGGGT
GCCAATACCC GCGTGCGCAG CTGGTGCCCG ACGCCCGGTC CGCAATACGG ATTCCTCGTC
ACGCACAACG AATCGATCTC GATCGCCGAC TTCTTCACCG TCCGCGACAA GAACGGCGAT
GTCGTCTACC GCCCGACCTG CCACTACGCC TATCACCCTG CCAACGACGC GGTTCTTTCG
CTGCACGAAA TGTTCGGCAA CGGCGGCAAG GCACAGCCTG AACTGCACGT CCTGGACGAG
CATGAGCTGA TAGACGGCGT CGACGAGCTC GGCGTGCTGC TCTACGGTCA CGCCAAGAAC
GCATATTGGT TCGGCTCGCG CCTTTCGCTG GAAGAAACCA GGCGCATCGC GCCCTACCAG
AACGCCACCG GGCTGCAGGT CACGAGCGCC GTTCTTGCCG GCATGGTCTG GGCTCTGGAA
AACCCGAAGG CGGGCATCGT CGAGGCCGAC GAAATGGACT ACAAGCGCTG CCTCGAAGTG
CAGCTCCCCT ATCTCGGTCC CGTCGAAGGG CATTATACCG ACTGGACGCC GCTTGACGGC
CGCCCCGGCC TGTTTCCGGA AGATATCGAC GCGAAGGACC CCTGGCAGTT CAGGAACATT
CTCGTCCGTT GA
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| Protein sequence | MADTTYPVYG EITGPIVMIG FGSIGHGTLP LIERHFRYDK SRLIVVEPRE DAKDTEIFAR
HGVRHVRAAV TKDNYKELLK PLLTEGGGQG FCVNLSVDTS SLDLIKLCRK LDVLYVDTVV
EPWLGFYFDA EKDNAARTNY ALRETVRREK EKNPGGTTAV STCGANPGMV SWFVKKALLN
LADDLGLKYD EPHQDDRDGW AKLMKKAGVK GVHIAERDTQ RAKHPKPLNV FWNTWSVEGF
ISEGLQPAEL GWGTHENWMP KNAKKHKKGC KAAIYLEQPG ANTRVRSWCP TPGPQYGFLV
THNESISIAD FFTVRDKNGD VVYRPTCHYA YHPANDAVLS LHEMFGNGGK AQPELHVLDE
HELIDGVDEL GVLLYGHAKN AYWFGSRLSL EETRRIAPYQ NATGLQVTSA VLAGMVWALE
NPKAGIVEAD EMDYKRCLEV QLPYLGPVEG HYTDWTPLDG RPGLFPEDID AKDPWQFRNI
LVR
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