| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2596 |
|---|
| Symbol | |
|---|
| ID | 5323464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2693314 |
|---|
| End bp | 2694087 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640791539 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001328261 |
|---|
| Protein GI | 150397794 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.476942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCCA AACCCAGCGG CGCACAGGGC GACCGGCCTC GACGCCTGCG TGCGTCACCC
CAGTCCGCAC CACCTCAGTC CGCACCACCC CAGTCCGCCT CACCCGAGTC TGCCCCACCC
GAGTCTGGAT CATCTGAGTC TTTGGAGGGG CCGCGCACTG AACCATCCCT GTCTCTCGAC
CGGATCGTGG CGGCGGCGGT GGAACTGCTG GACACCAGGG GCGTCGACGG ATTGAAGATG
CGTCAGCTGG CCGACCGTCT CGGTGCGGGC GCGATGAGCC TGTACTGGCA TGTCGAAAAT
AAGGAAATGG TCTTCGATCT GGCGCTCGAC TCAGTGCTCG CATATCGCGG ACCGCCGCAG
AAAGCAGAGT CTCGGGACTG GCGCGGCGAA GTGTTTCATA TGCTTGAAGA CTGGCGCGCC
AGCATGCTGC GCCATCCCTG GTCGGCGTCG CTGTTGCCGC GCCGGGCACT TGGCCCGAAC
ATTCTCAGCC GCCTGGAACT GCTGAGCAAT ACCTTGTCCA GGGCCGGTGT AGCGGACGCG
GATCTGAATG CCGCGATATG GTCGCTCTGG AACTATGTGA TAGGCGCAAC CGTCACGCGG
GCGAGTTTCG TCCTCTCGGA CGAGGACAGG TCCGTCGCGC AGCAGCGCCT TACAGGTCTC
GGCGAACACT ATCCGACAAT CGAACGCTCT CGGCTGCTGT TGGATGACGA TTGGGACGGC
GCATTCAGGA AGGGTCTAGA CTTCCTGCTC GACGGACTTG CTCCGAGATC ATGA
|
|---|
| Protein sequence | MAAKPSGAQG DRPRRLRASP QSAPPQSAPP QSASPESAPP ESGSSESLEG PRTEPSLSLD
RIVAAAVELL DTRGVDGLKM RQLADRLGAG AMSLYWHVEN KEMVFDLALD SVLAYRGPPQ
KAESRDWRGE VFHMLEDWRA SMLRHPWSAS LLPRRALGPN ILSRLELLSN TLSRAGVADA
DLNAAIWSLW NYVIGATVTR ASFVLSDEDR SVAQQRLTGL GEHYPTIERS RLLLDDDWDG
AFRKGLDFLL DGLAPRS
|
|---|
| |