Gene Smed_2548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2548 
Symbol 
ID5323416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2646218 
End bp2647231 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content63% 
IMG OID640791491 
Producthypothetical protein 
Protein accessionYP_001328213 
Protein GI150397746 
COG category[S] Function unknown 
COG ID[COG4093] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTGA CCGCCGTCGC CAAGCCATCG CCTGCCGGAA GGAAATTCTT CTGGCTGGCA 
ACAGGTATCG TGCTCGTGAG CGGCCTCTAT TCCGCCGGCT GGTTTCTCGC CGCGGACCAG
ATTCGAGAGC GGCTGACCGC TTTTCTGACG GAAAGACAAG CGATCGGCTT CAGCGGTGAA
TGCGGCGCTA TGGAAGTGCG CGGCTTTCCC TTCCGCCTCG GTCTTTTCTG CGACAAGGTT
CGCCTGGATG ATACACGCCG TGGCGCTTCC GCTTCCTTCG GCGCCTTGCG TTCGGCGGCG
CAGGTCTACC AGCCCGGGCG TGCGGTGCTT GAGCTGGACG GGCCTGCAGA AATACGCGTG
TCCCCCGGCT TCACCGTTTC GGCCGACTGG ACCCTTCTCC GTGCAAGCGT CGCGGCAAGC
TTCTCTGGCG TCGACCGCAC GTCGATCGCC TATGACAACC TGACAGGCAC CGCGCGTGCG
CCCCTGACCG GCACGGGCCT CGGCTTCGGC GCCAGCCATG GCGAGCTTCA TCTGCGCCAG
AACGAGGGCG ATCTCGACGC AGCCCTCAGC ATCGAAGGGC TCGACCTGCG CCCCGACGAG
GGCCCCAGCC TGGCCGCACC TGCCGATGTA TCAATGGATC TGACCGTCGC GGAAAAAGCC
GAGTGGCTTC AGTCGGCCCA CGTAGCACCG CACATGCTCC GCGGCAGCAA AGGCGAATTG
CGGCAATTGA CACTCGATGC GGGCTCGGGG ATGACGGCGA AGCTCACCGG CCCCTTTTCG
GTGAACGATC AAGGCCTGAT TTCAGGAGAA TTTTCCCTCA CGCTTGCAAA TATCGATGCC
TGGCGGGAAA ACATCGTCAA GATCGCTCCC GACGAAAAAG ACCTCATCGA TAACGTCGCG
AATATGTTGA AGGCCCTTGC GGGCGGCAAG AACGAGGCGA CCGTGAAGCT GAACGTCAGG
GACGGCACCG CTTTCCTCGC CTTCGTACCG ATCGGGATGC TGCCGACGCT GTAG
 
Protein sequence
MTVTAVAKPS PAGRKFFWLA TGIVLVSGLY SAGWFLAADQ IRERLTAFLT ERQAIGFSGE 
CGAMEVRGFP FRLGLFCDKV RLDDTRRGAS ASFGALRSAA QVYQPGRAVL ELDGPAEIRV
SPGFTVSADW TLLRASVAAS FSGVDRTSIA YDNLTGTARA PLTGTGLGFG ASHGELHLRQ
NEGDLDAALS IEGLDLRPDE GPSLAAPADV SMDLTVAEKA EWLQSAHVAP HMLRGSKGEL
RQLTLDAGSG MTAKLTGPFS VNDQGLISGE FSLTLANIDA WRENIVKIAP DEKDLIDNVA
NMLKALAGGK NEATVKLNVR DGTAFLAFVP IGMLPTL