| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2297 |
|---|
| Symbol | |
|---|
| ID | 5323158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2374629 |
|---|
| End bp | 2375471 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791235 |
|---|
| Product | extensin family protein |
|---|
| Protein accession | YP_001327964 |
|---|
| Protein GI | 150397497 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.354351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.261426 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA CTGGAATCAT TCTCGTTTCC GCCTTCCTCC TTTCGGGCGC AACGCTGCCC
GAAACAGGGC CGCGGCCGGT GCCGAAACCG GTCACGGGCG GGGATCAGCC GATGCCGACG
CCAAAGCCGC CGCAGCCGCA AGCCGATGAT GCGAAGGCAA AGGAGTCCGG AGAGCCGCAC
AAGGCGCAGG AGCAGAATGG TGCGCGTGCC GGGGGAGAAC AGCGCCCCGG TTGGAAGGAC
GACATTCTTG ACGCCAGGCC GGTCCTGGCG ATCGAAAAGG AAGACCCGAA GGAATATGCC
GCCTGCCTGT CGGAACTCAA ATCGCTCGGC AGCACGTTCG CCGAAGTCGA TCGCATGGAC
GAGGGCAAGG GTTGCGGGAT CGACAAGCCG GTCAAGGTCA CTGCGATACT GCCGGGGGTG
ACCCTGAAGC CCGAGGGCGT GATGCGTTGC GAAGCCGCAC TGGCGTTGGC TCGGTGGACC
AAAGAAACGG CAGCGCCGGC CGCAAGGAGC GCCTTCGGGG CCGAAGCCCG CATCGTCGCT
TTGAACCAGG CCTCGACCTA TATCTGCCGC CTGAGGAACA ATGCCGACAC CGGCAAGATC
TCCGAACATG CGCGCGGCAA CGCGGTCGAC ATCGCTTCAT TCACCCTTGG CGACGGCAAG
GCCGTCGAAA TCCAGCCACG CGACGAGGAT GGCACCCTTA CCGGCGCCTT TCAGCGGGCG
GTCACGGCTT CGGCCTGCCT CTATTTCACG ACCGTGCTCG ACCCAGGCAG CGATGCTGCC
CATGAAGACC ATCTGCATCT CGATGTCATC GAAAGAAGGA ACGGGTATCG GTATTGCCGT
TGA
|
|---|
| Protein sequence | MRRTGIILVS AFLLSGATLP ETGPRPVPKP VTGGDQPMPT PKPPQPQADD AKAKESGEPH
KAQEQNGARA GGEQRPGWKD DILDARPVLA IEKEDPKEYA ACLSELKSLG STFAEVDRMD
EGKGCGIDKP VKVTAILPGV TLKPEGVMRC EAALALARWT KETAAPAARS AFGAEARIVA
LNQASTYICR LRNNADTGKI SEHARGNAVD IASFTLGDGK AVEIQPRDED GTLTGAFQRA
VTASACLYFT TVLDPGSDAA HEDHLHLDVI ERRNGYRYCR
|
|---|
| |