| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2190 |
|---|
| Symbol | |
|---|
| ID | 5323050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2266134 |
|---|
| End bp | 2266949 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791128 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001327858 |
|---|
| Protein GI | 150397391 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.501419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00965408 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCTG AAAAATCGAA CCCCGCCCCT CTTGGACTGA AGCTCGCCGC CGGCGCCGGC
CTCGCCTTCA TGCATCTGCC GATTCTGCTG ATCTTTCTTT ATGCCTTCAC GACGGAGGAG
AAGAGCTACC AGTTTCCGCC GCCGGGGCTT ACCACTCAGT GGTTCGCCGT CGCCTGGAGC
CGCCCGGACG TCTGGGCCGC GCTGACGCTG TCCGTCAAGG TCGCCTCGAT CGCAACGGCG
GTCGCGCTCG TGCTGGGGAC GCTCTGCGCC GCCGCCGTCA GCCAGACCCG CTTCTTCGGC
CGCGAGACGA TCTCGCTTCT CGTCATCCTG CCGATCGCGC TTCCCGGCAT CATCACCGGC
ATCGCGCTGC GCTCGGCCTT TTCGATGGCC GATATCCCCT TCTCCTTCTG GACCATCGTG
CTCGGCCACG CCACCTTCTG CATCGTCGTC GTCTACAACA ATGCCGTCGC CCGTTTCCGC
CGTATTTCGG GCTCGCTGAT CGAGGCCTCG ATGGACCTCG GCGCCGATGG TTTTCAGACC
TTCCGCTACA TCATCCTCCC GAACATCGGA ACGGCGCTGC TTGCCGGCGG CATGCTCGCC
TTCGCGCTTT CCTTCGACGA GGTGATCGTC ACCACCTTCA CTGCCGGACA GCAATCGACC
CTGCCGATCT GGATGCTCGA AGAACTGATC CGTCCGCGCC AGCGCCCGGT GACCAACGTC
GTCGCCATGG TCGTCGTGAT GGTCACCTTC CTGCCGATCC TCGGCGCCTA TTACCTGACC
CGCGACGGCG ATCAGATCGC CGGCGCCGGC AAATGA
|
|---|
| Protein sequence | MRSEKSNPAP LGLKLAAGAG LAFMHLPILL IFLYAFTTEE KSYQFPPPGL TTQWFAVAWS
RPDVWAALTL SVKVASIATA VALVLGTLCA AAVSQTRFFG RETISLLVIL PIALPGIITG
IALRSAFSMA DIPFSFWTIV LGHATFCIVV VYNNAVARFR RISGSLIEAS MDLGADGFQT
FRYIILPNIG TALLAGGMLA FALSFDEVIV TTFTAGQQST LPIWMLEELI RPRQRPVTNV
VAMVVVMVTF LPILGAYYLT RDGDQIAGAG K
|
|---|
| |