Gene Smed_2089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2089 
Symbol 
ID5322948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2148722 
End bp2149120 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content60% 
IMG OID640791026 
Producthypothetical protein 
Protein accessionYP_001327757 
Protein GI150397290 
COG category[S] Function unknown 
COG ID[COG5462] Predicted secreted (periplasmic) protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00742769 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCAGAA CGCTCGATGT TGTCCTGATC GTCATCATGA CGGCGGCCGC AACGGTCACC 
TATACGATCA AGCATAAGGC TGAGAACAAG CTTGAAGAGG TGCGCAGGCT CGACGCGGCC
ATAAAGCTTG AAGAGGATAC GATCGATCTG CTCAAGGCCG ATTGGGCGCT TCTGACCCAG
CCGAACCGGC TTGAGAGGCT GGTGACCGTC TTTGCCGCCG ACCTGCAACT CGCGCCGACC
CCCTCGACGC AGCTTGCGCA ACCGGAGGAG TTGCCGATGC TGAGGGCCGA TCTGCCCCCT
TCCGAAGAGG ATAAGAAGGC CAAGGACAAG GCGGCGGCAG ACAGCATCGC CGCAGTCATC
GAGGCCGACA ATATCAAAAC AGGTTCGGTG GCGCGCTGA
 
Protein sequence
MLRTLDVVLI VIMTAAATVT YTIKHKAENK LEEVRRLDAA IKLEEDTIDL LKADWALLTQ 
PNRLERLVTV FAADLQLAPT PSTQLAQPEE LPMLRADLPP SEEDKKAKDK AAADSIAAVI
EADNIKTGSV AR