| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2070 |
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| Symbol | ligA |
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| ID | 5322929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2122076 |
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| End bp | 2124229 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640791007 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001327738 |
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| Protein GI | 150397271 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00183267 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGAATC AAAGAAAACC GGTCGAGCAA ATGACCGAAG CCGAAGCCGC CGAGGAACTC
GCCTTCCTGG CGGCGGAACT TTCGCGCCAC GACATGCTCT ATCACGGGAA GGATGATCCG
GAGATTTCGG ACGCGGACTA CGACGCGCTG AAGCGGCGCA ACGATTTGAT CGAGGAGCGA
TTTCCGGCGC TCATCCGCGA GGACAGCCCC TCGCAAAAGG TCGGTGCCGC ACCTTCGCTG
ACCTTCGCGC CCGTAGTTCA TGCGCGGCCG ATGCTTTCGC TCGACAACAG TTTCTCGGAC
GAGGACGCCC GCGCATTCGT CGCCGGCATC TACCGCTTTC TCGGGCGGCT CCCGGATGGA
TCGATCGCCT TTACGGTGGA ACCGAAGATC GACGGTCTCT CCATGTCGCT GCGTTACGAG
AACCGTCGGC TGGTCACGGC CGCGACCCGC GGCGACGGCA CGACCGGGGA AAATGTCACC
GCCAATGTCC GCACCATCGG CATGATACCG CAGAGGCTTC CTGCTGAAGC GCCCGACGTG
GTCGAGATCC GCGGCGAAAT CTATATGGCG AAATCCGACT TCGCCGCGCT CAATGCCGAA
ATGGCGGCGC AGGGCAGGCC ACTCTACGTC AACCCCCGCA ATACCGCATC CGGATCGCTC
CGCCAGCTCG ATGCCAAGGT GACCGCGAGC CGCAGGCTGC GCTTCTTCGC CTATGCCTGG
GGCGAGATGT CGGCGATGCC GGCGGATACG CAGCTCGGAA TGGTGGAGAC CTTCAAGGCC
TGGGGATTCC CGGTCAATCC GCTGATGCAG CGCTTCTTCT CCGCCGACGA GCTCCTGGAG
CACTATCACC ATATCGAGCG GGAGCGTCCG GAGCTGGACT ACGACATCGA CGGGGTCGTC
TACAAGGTCG ACCAGCTCGA TCTGCAGGCT AGGCTCGGCT TCCGTTCGCG CAGCCCGCGC
TGGGCGACGG CGCACAAGTT CCCGGCAGAG CGGGCATTCA CGCGGCTGAA GGGCATCGAC
ATCCAGGTCG GGCGCACCGG CGCGCTGACG CCTGTCGCGC GGCTGGAGCC AATCACGGTC
GGGGGCGTGG TCGTGACCAA TGCAACGCTG CACAACGAGG ATTACATCCG CGGCATCGGC
AATACGGGCG AACCGATCCG CGAAGGGCGC GACATCCGCA TCGGCGACAT GGTCATCGTT
CAGAGGGCAG GGGACGTGAT TCCCCAGATC GTCGACGTGG TGATGGACGA GCGCCCTGAA
GGGACCGAGC CTTACCGGTT TCCGACGAGC TGCCCTATCT GCGGCAGTCA CGCGGTTCGC
GACATCAACG AGAAGACCGG CAAGGTAGAT GCCGTGCGCC GTTGCACGGG CGGTTTCGTC
TGCCGCGCGC AGGCGGTCGA GCACCTGAAG CATTTCGTCT CGCGTAATGC CTTCGACATC
GAGGGGCTCG GCTCCAAGCA GATCGAGTTT TTCTTCGAAA GCGAGGACGA GACCCTCAGG
ATCCGCACCG CACCAGATAT CTTCACGCTC GAACGCAGGC AGGAGTCCTC GCTTACGAAG
CTCGAAAACA TCGATGGCTT CGGCAAGGTC AGCGTCCGTA AACTCTACGA GGCGATCAAT
GCCCGCCGCT CGATTGGGCT GCATCGCTTT ATCTATGCGC TCGGAATCCG CCACGTCGGG
GAGACGACGG CCAAGCTTCT GGCGCGCTCC TACGGCACCT ACGAGCACTT CGGCGCGGCC
ATGACCGAGG CGGGCGGCTT TTCGGGAGAC GCCTGGAACG AACTGAACAG CATCGACGGC
ATAGGCGAGG TGGTCGCCCG CGCCATCGTC GAATTCTACA AGGAGCCGCG CAACCTGAAG
GTCCTCTCCG ACCTTCTGGA GGAGGTTACG CCTGAGCGTG CGGAGATGCC CGTTGCGACC
GACAGCCCCG TGGCCGGCAA GACGGTCGTC TTCACCGGTT CACTCGAAAA GATGACCCGC
GACGAGGCCA AGGCGAAAGC GGAGAGTCTC GGCGCCAAGG TCGCAGGCTC CGTCTCCAAG
AAGACCGACA TCGTCGTCGC AGGCCCTGGC GCCGGCTCGA AGCTCGACAA GGCACGCGAA
CTCGGCCTCC AGACGATGGA CGAGGACGAG TGGTTGGCGC TGATCGGCGG GTAG
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| Protein sequence | MLNQRKPVEQ MTEAEAAEEL AFLAAELSRH DMLYHGKDDP EISDADYDAL KRRNDLIEER
FPALIREDSP SQKVGAAPSL TFAPVVHARP MLSLDNSFSD EDARAFVAGI YRFLGRLPDG
SIAFTVEPKI DGLSMSLRYE NRRLVTAATR GDGTTGENVT ANVRTIGMIP QRLPAEAPDV
VEIRGEIYMA KSDFAALNAE MAAQGRPLYV NPRNTASGSL RQLDAKVTAS RRLRFFAYAW
GEMSAMPADT QLGMVETFKA WGFPVNPLMQ RFFSADELLE HYHHIERERP ELDYDIDGVV
YKVDQLDLQA RLGFRSRSPR WATAHKFPAE RAFTRLKGID IQVGRTGALT PVARLEPITV
GGVVVTNATL HNEDYIRGIG NTGEPIREGR DIRIGDMVIV QRAGDVIPQI VDVVMDERPE
GTEPYRFPTS CPICGSHAVR DINEKTGKVD AVRRCTGGFV CRAQAVEHLK HFVSRNAFDI
EGLGSKQIEF FFESEDETLR IRTAPDIFTL ERRQESSLTK LENIDGFGKV SVRKLYEAIN
ARRSIGLHRF IYALGIRHVG ETTAKLLARS YGTYEHFGAA MTEAGGFSGD AWNELNSIDG
IGEVVARAIV EFYKEPRNLK VLSDLLEEVT PERAEMPVAT DSPVAGKTVV FTGSLEKMTR
DEAKAKAESL GAKVAGSVSK KTDIVVAGPG AGSKLDKARE LGLQTMDEDE WLALIGG
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