Gene Smed_1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1989 
Symbol 
ID5322848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2039871 
End bp2040647 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content61% 
IMG OID640790927 
ProductTfuA domain-containing protein 
Protein accessionYP_001327658 
Protein GI150397191 
COG category[S] Function unknown 
COG ID[COG3482] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.322278 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCCG ATGGTCCGAT TCTGGTGTTC CTTGGTCCGA CCCTGCGGCT TGCCGAGGCG 
GAAAAAATCC TCGATGCCGT TTATCTGCAG CCGGCTGCGC AAGGTGACTT TCTGCTTGCT
GCGCATGCCT TTCGTCCGAG CGCCATGGTT CTGATAGACG GACAATTCCA GGACAGACCG
GCGGTCCGGC ACAAGGAAAT CCTCTGGGCG ATGGCGCAGG GGATTGTCGT CATCGGAGCC
GCCAGCATGG GCGCGCTCAG AGCAGCGGAG CTTGACGCTT TCGGCATGAT CGGCGTCGGC
CTCATCTACA GGTGGTATCG GCGCTTCAGC CTTGGTCCGC TTTCCGACGC CGCGCCAGAC
GATGCGATTG CCGTGCTTTC GGGACCGCCG GAACTCGGTT TTCTTCCTTT GACGGATGCA
CTTGTCGACC TGCAGCGGAC CTTTTTCGCC TTGTCGCGAA GCGGTGTCAT CCTCCCTTCG
GAGCGCGATC GGCTTACAAC TATCGCTAGA GATCTGAACT TCCGGGAGCG TTCCCTTGCG
GCAGTCTTTC GAGCGGCGGG CCGCGCGCCC GACAGGAGCG GCGAACTCAG AGCGCAAATC
ATCGGGCAGA AGCGTCGCGA TGCGCTGGAT GCGCTGCGCA AGGCTCCGGT CCTTCTGGCG
CAGCACCGTC AGGCGCACCG CGCTGATGGC TGGATCGCAA CGAACACCTT CCTCCGGGAC
CTAGAGGCCG GCGGCATTGA CTCGAATTTG GTGAACACCT ATAAATTGAA ACCATAA
 
Protein sequence
MAADGPILVF LGPTLRLAEA EKILDAVYLQ PAAQGDFLLA AHAFRPSAMV LIDGQFQDRP 
AVRHKEILWA MAQGIVVIGA ASMGALRAAE LDAFGMIGVG LIYRWYRRFS LGPLSDAAPD
DAIAVLSGPP ELGFLPLTDA LVDLQRTFFA LSRSGVILPS ERDRLTTIAR DLNFRERSLA
AVFRAAGRAP DRSGELRAQI IGQKRRDALD ALRKAPVLLA QHRQAHRADG WIATNTFLRD
LEAGGIDSNL VNTYKLKP