| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1763 |
|---|
| Symbol | |
|---|
| ID | 5322621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1845410 |
|---|
| End bp | 1847587 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640790701 |
|---|
| Product | putative Chase2 sensor protein |
|---|
| Protein accession | YP_001327433 |
|---|
| Protein GI | 150396966 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4252] Predicted transmembrane sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.544846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0880592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA CGCAGCTATT TGGGGTCATC GTCGGCCTTG TGATCGTGGC GGCGCTTACG
ACCCTGCGTG CAAGCGACCC ACCACTTCTG CGGCTCGCCC GCGACCTCAC CTTCGATGAA
TATCAACGCC TGGCGCCGCG CAGCTTCGAG AACGTTCCCG TTCGCGTCGT CGACATCGAC
GAGGCATCGC TCTCAGAGTT CGGCCAGTGG CCGTGGCCGC GCGATCGCAT TGCGGCCTTG
GTGGACAGGC TCTCGGAACT GGGTGCGGCG GTCATTGCCT TTGACATCCT GTTCTCCGAA
CCCGACCGTC TGTCGCCACG CAGCGTCATG CGCGATGTCG CCGGCGTCGA TCCCGATCTC
CTCGGGCTAC TGCCGGACAA TGACGAGATA TTTGCCCGGT CCATCGCCGA CCGGCCCGTC
GTCCTCGGCT TCGGCCTTTC AAATGCAGGA GACTACCGGC CACCGGTGAA AGCCGGTTTC
GCCTTCACCG GTGAAAGCCC GTTCGATGCC CCGCCGCGAC TGACGGCCGC GACGCCTTTG
AGGTCGCAAC TCGAAACCAG TGCTGCCGGA TTAGGACATA TCAGTCTCAA TCCCGGGAGC
CGGTCCGCGG TCGTGCGCGC CGTCCCGCTG CTGTTGAGTG ATGGCGGCCA GCTCTATCCG
AACCTGGCGA TTGAAGCGCT CCGCGTTGCC CAAGGGGTCT CCACATACGT TATTGCCGGT
GCTCCGGACA TACCCGACAC AATCACACTG ATAAAGGTTG GGGCGTTCGT CGTGCCGGTC
ACGGCAACCG GTGAGCTCTG GCTTTATGTC AGTCCCGACC GTGCTGAAAG ATATGTCTCG
GCCGGCCAGG TGCTGGCGCC CGCCGGCGCC TCCTCTGAAA CGCGGGCGGC CATCGAAGGC
AGCATTGTCT TTGTGGGCAC GTCGGCAGCG GGCCTTCAGG ATATTCGGAC CACCGCGCTT
GGGCACAACG TGCCCGGCGT GTCGCTGCAC GCGCAGACCG TCGAACAGGT TCTGTCCGGC
CGGTTTCTCT CACGGCCGGA TTGGGCAGAC GGGCTGGAGA TACTCGCCAT TGCCGTGGCC
GGAATTCTGC TCGTCCTGCT GACCACCTTC GTCAGCCCAG CCGTCGCGCT TGGATGCGGC
CTCATGATAA CGGCGCTGGC CCTCGTGGCC TCCTGGTCCG CCTTTCTCTA TGGGGGCTTG
TTACTCGACC CCCTGGCGCC CATTCTCGCC GGATCGATCA CCCATTTTGC GGCAACGGCC
TATCGTTTCC TGGTCATCGA CCGGGAGCGG CGCGTGGTGC GGCGCGCCTT TGGGCAATAC
TTGTCGCCGT CGCTACTCTA TCGAATCGAG CATACGCAAG ACGCCCTGCG TCTTGGCGGT
GACGATCGGG AATTGACCAT CATGTTCGTC GACGTGCGCA ATTTTACGGA GATGAGCGAG
CGCCTCACGC CGGGAGAGGT GGTCCGGTTC CTCAATACGC TTCTCGATGC GTTGAGCCGC
CACGTGATCG CGAACGAGGG CACGCTGGAC AAGTTTATCG GCGATTCGAT CATGGCATTC
TGGAACGCGC CTGTTGACGT CGCCGATCAC ACGGGCAAAG CCGTCCGCGC CGCCCTGGCC
ATGCGCGAAA CGCTCGCTCG TCTGAATGAG AGCGATGCGT TCGGTTTCGG CAGCAAGCAA
ACGGTGGCCA TCGGCGTGGG CATTCATACC GGGGTTGCCT GCGTCGGCAA CATGGGAGCG
GAGATGCACT TCAACTATTC CGCGGTTGGT GACGCGGTCA ATGTCGCTGC TCGGATCGAG
GCCGCCTGCA AGGATGTAGG CTTCGACATT CTGATATCCG ATACGGCGGC AAAAGCGGCC
GGCAGATGCG CCTTGCTCGA GGCAGGGTCG CTGGGGTTGA AAGGCAAGAG CACGCGAACA
CAGGTCTTTG CCGTCGTGGG TGACGAGCGG GTGGCCGCAT CGCCCGAGTT TTCAGAGCTG
CAGCACCTTC ATGAGCAGTT GATCGGATCT CTGCGATTGA GATTTCGTCC GCGTCGCGAA
ATCGTGAATG CGGCGAAGCT AAAGGCGTCG GCTCTATGTG GTGGATTGTC GGATTTCTAC
CGCCGGATCA CGCGCCGGGC GGAACATTTC GCAGGTGAAC AAATGGCCGT CGAGAACGAG
GGCAGGTCGG CTGAATAG
|
|---|
| Protein sequence | MTRTQLFGVI VGLVIVAALT TLRASDPPLL RLARDLTFDE YQRLAPRSFE NVPVRVVDID
EASLSEFGQW PWPRDRIAAL VDRLSELGAA VIAFDILFSE PDRLSPRSVM RDVAGVDPDL
LGLLPDNDEI FARSIADRPV VLGFGLSNAG DYRPPVKAGF AFTGESPFDA PPRLTAATPL
RSQLETSAAG LGHISLNPGS RSAVVRAVPL LLSDGGQLYP NLAIEALRVA QGVSTYVIAG
APDIPDTITL IKVGAFVVPV TATGELWLYV SPDRAERYVS AGQVLAPAGA SSETRAAIEG
SIVFVGTSAA GLQDIRTTAL GHNVPGVSLH AQTVEQVLSG RFLSRPDWAD GLEILAIAVA
GILLVLLTTF VSPAVALGCG LMITALALVA SWSAFLYGGL LLDPLAPILA GSITHFAATA
YRFLVIDRER RVVRRAFGQY LSPSLLYRIE HTQDALRLGG DDRELTIMFV DVRNFTEMSE
RLTPGEVVRF LNTLLDALSR HVIANEGTLD KFIGDSIMAF WNAPVDVADH TGKAVRAALA
MRETLARLNE SDAFGFGSKQ TVAIGVGIHT GVACVGNMGA EMHFNYSAVG DAVNVAARIE
AACKDVGFDI LISDTAAKAA GRCALLEAGS LGLKGKSTRT QVFAVVGDER VAASPEFSEL
QHLHEQLIGS LRLRFRPRRE IVNAAKLKAS ALCGGLSDFY RRITRRAEHF AGEQMAVENE
GRSAE
|
|---|
| |