| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1590 |
|---|
| Symbol | |
|---|
| ID | 5322448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1688051 |
|---|
| End bp | 1688881 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640790534 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001327266 |
|---|
| Protein GI | 150396799 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCATTG CCGAAACCAT GATTCCGCCG CAGGCTCCGC CCCCCGCCCC GCCGAGGCCC
TACACATTTT CGCGCTTCTT CGGCAGCGTC GCGCTCGGCA TCTGGCTTGC GCTCGGCGTC
GGCATTTTCC TGACCGTCGT CAATGGCTGG GATCCGGAGA AGTTCTCCCG CTACGCACCG
AACTTCCTGT CCGGCCTAGG GGTGACGCTG ACGCTCGTGA CCGCTTCGAT TCTCATGGGC
GCCGTCGTTT CGCTGCCGGT CGCGCTCGGG CGCATGTCCA AGAACAGGCT TTGGGGTTGG
CTTGCCTATG CCTATGTGTA TTTCTTCCGT GGCACGCCGC TGATCACCCA GCTCTTTCTC
ATCTATTACG GGCTTGGCAG TTTCCGACCG CAGCTCGAAA CCGTGGGCCT TTGGTGGTTC
TTCCGCGACG CCTGGAACTG CGCGCTTTTC ACCTTCACAC TCAACACTGC CGCCTATCAG
GCCGAAATTC TGCGCGGGGC GATCGAGAGC GTGCCGCGCG GCCAACGGGA AGGGGCGGCC
GCGCTCGGCC TGCCGGACCG CATCGCCTTT TTCAAGGTCA TTCTGCCCCA GGCGATGATT
GTGGCACTGC GCCCGTATGG AAATGAAATC ATCCTGATGA TCAAGGGATC GGCGATCGTA
GCGATCGTGA CGGTTTTCGA CCTCATGGGA GAGACGCGGC GTGCCTTCTC CCGCACCTTC
GATTACCAGA TGTATATCTG GGCGGCGATC CTGTACCTGC TGATGGTGGA GTTGCTGCGC
AACGTCTGGG GCTGGCTGGA AGCTCGCCTG ACACGCCATC TGAAGCGCTG A
|
|---|
| Protein sequence | MSIAETMIPP QAPPPAPPRP YTFSRFFGSV ALGIWLALGV GIFLTVVNGW DPEKFSRYAP
NFLSGLGVTL TLVTASILMG AVVSLPVALG RMSKNRLWGW LAYAYVYFFR GTPLITQLFL
IYYGLGSFRP QLETVGLWWF FRDAWNCALF TFTLNTAAYQ AEILRGAIES VPRGQREGAA
ALGLPDRIAF FKVILPQAMI VALRPYGNEI ILMIKGSAIV AIVTVFDLMG ETRRAFSRTF
DYQMYIWAAI LYLLMVELLR NVWGWLEARL TRHLKR
|
|---|
| |