Gene Smed_1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1572 
Symbol 
ID5322430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1669977 
End bp1670519 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content59% 
IMG OID640790516 
Producthypothetical protein 
Protein accessionYP_001327248 
Protein GI150396781 
COG category[S] Function unknown 
COG ID[COG3184] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0621324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.847942 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAT TCGCAGGTCT TGCCCGCACT TTCGCTTCCG TTGCGATCCT CGTTTCGGTG 
TCAGTTCCGG CGGTGCAGGC ACAGGACGTG ACGGAGGATC AGATCAAGGC TGCGCGTGCG
ACGATCGCGG CGCTCGGTGT GACCAACAGC TTTGACAATA TTCTGCCGAA CCTCGCCGAG
CGACTGAAGA ATACCCTGAT TCAGGCGTCG CCGAACCACC AGGAACTGAT CACCGCGACT
GTGGACGAGA AGGCGCTCAG CCTCGCCGGA CGACGCTCGG ATCTCGAGCG CGAAGCCGCT
GCGATCTACG CGAAGACCTT TACCGTCGAT GAGCTGAAGG CCATCGCCGA CTTCTACAAC
TCCACGGCCG GCAAGAAGCT TCTGAACGAT GGTCCGATCG CTTCTCGCGA AATGTTGAAG
GCTGCCGACA TCTGGGCGGC CGGCGTTTCG CGCGATCTGA CAAACGAAGC AACAAAATCC
CTCGATGAGA AGATCGGCAA TGCGGCGGCG GCAAATGCCG GTACTACGGC GCCTGCGCAG
TAA
 
Protein sequence
MNKFAGLART FASVAILVSV SVPAVQAQDV TEDQIKAARA TIAALGVTNS FDNILPNLAE 
RLKNTLIQAS PNHQELITAT VDEKALSLAG RRSDLEREAA AIYAKTFTVD ELKAIADFYN
STAGKKLLND GPIASREMLK AADIWAAGVS RDLTNEATKS LDEKIGNAAA ANAGTTAPAQ