| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1397 |
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| Symbol | |
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| ID | 5322248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1472542 |
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| End bp | 1474362 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640790339 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001327078 |
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| Protein GI | 150396611 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.982775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.886089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTTGC GCGCAGTTCT TTCCGGCCTG GTGATGCTCG TGGCAGCCAG CATATTTGCC
AACGGTGCTT TGGCCGCGCC CGTGCATGCG ATCGCCATGT ATGGCGAACC AGCCTTGCCA
GCCGACTTCA AGCACTTCCC TTACGTCAAC CCGGAGGTGA AGAAAGGCGG GAGGATTGCC
TATGGCGTCG TCGGCACGTT CGACAACCTC AACCCCTTCA TCCTGAAGAG CATGCGCACG
ACTGCGCGCG GCATGTGGGA TCCCGGTTTC GGCAATCTGG TCCACGAGTC CCTGATGCAG
CGCTCGCAGG ACGAGCCCTT CACCATGTAT GGCCTGCTCG CCGAGACCGT CGAATGGGAC
GATGACCGTA CTTTCATCCA GTTCAACCTC AATCCCAAGG CGCGCTGGGC CGACGGTCAG
CCGGTAACCG CAGAAGACGT GATCTTCACC TTCGAATTGA TGCGCGACAA AGGTCGCGCA
CCCTTCAGCA ACCGCCTCTC CAAGGTGGCG AAGATGGAAA AGGTCGGGGA GCGAAGCGTG
CGCTTCACTT TCACCGAGGA TGCCGACCGA GAGGTTCCGC TTTTGCTTGG GCTTTCACCC
GTGCTGCCGA AACATGCGGT CGACGTCGAG GCGTTCGATC GAACGAGCCT CAAACCGCCG
CTCGGCTCCG GCCCTTACCG CGTCGCGGAA GTCAGGCCCG GAGAACGAAT CGTCTATCGC
CGCAATCCCG ATTATTGGGC CAAGGATCTG CCGTCCAAGG TCGGTCTCGA CAATTTCGAC
GAGATCTCGG TTGAGTACTT TCTTCAGGAG AACACGCTTT TCGAAGCCTT CAAGAAGGGC
GTCGTAGACA TCTATCCGGA AGGAAGCGCC ACCAAATGGG CTCGCGCCTA TGATTTCCCC
GCGGTCCGCA GCGGCGACGT GATCAAGGAA ACATTCAAGC CGAAGACGCC CTCCGGAATG
CTCGGCTTTG TCTTCAACAC GCGCAGGCCT GTATTCGACA ACATCAAGCT CAGACAGGGC
CTGGCTCTCG TCTTCGACTT CGAGTGGGTC AACAAGAACC TCTTCGACGG TGCCTATACC
CGCACGCAAA GCTACTGGCA GAATTCGTCG CTTTCCTTCC TGGGCGTAGC AGCCGACAAT
CGTGAACTTG ACCTCATGGG AGATGTCAGG GAGCGCATCA ATCCGGCGAT CCTCGACGGC
AGCTATAGGC TCCCCGTTAC GGACGGCTCG GGTCGCGATC GCAACGTGCT TCGGGAGGCA
GTGACGCTGC TGCGTGAAGC GGGCTACTCG ATCAAGGACG GCAAGATGGT CGATGGCAAC
GGCACGCCGC TTGCTTTCGA GATCATGAGC CAGAATGCCG GACAGGAGAA GATCGCCCTC
GCCTACCAGC GCTTTCTGGC CCCGCTCGGC ATTGTTGCAA GGGTTCGGAC GGTCGATGAT
TCGCAATATC AGTTGCGCAG CCAGTCCTTC GATTACGACG TCATCATAAA GTCGTTTCCG
TCGTCGCTCT CCCCGGGTCT CGAACAGATC AACCGCTGGA GCTCGCGAAC ACGGGACAGG
CAAGGTAGCG ACAATTTCGC CGGGGTCGCC GACAAGGACG TCGACAAACT GATCAACAAC
ATACTCCAGG CACGAAACCC CGATGATTTC ACCGCCGCCG TTCGCGCGCA CGACCGGCTG
CTGGTCAACA ATTCCTATGT GGTTCCGCTT TACCACCTCG ATGCGCAATG GATCGCCCGG
TGGAAGCGTA TCGGCCGGCC AACGGCTGAG CCGCTCTATG GCTATCAGTT GCCGAGCTGG
TGGGACGAGC GGGTCCAGTA A
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| Protein sequence | MKLRAVLSGL VMLVAASIFA NGALAAPVHA IAMYGEPALP ADFKHFPYVN PEVKKGGRIA
YGVVGTFDNL NPFILKSMRT TARGMWDPGF GNLVHESLMQ RSQDEPFTMY GLLAETVEWD
DDRTFIQFNL NPKARWADGQ PVTAEDVIFT FELMRDKGRA PFSNRLSKVA KMEKVGERSV
RFTFTEDADR EVPLLLGLSP VLPKHAVDVE AFDRTSLKPP LGSGPYRVAE VRPGERIVYR
RNPDYWAKDL PSKVGLDNFD EISVEYFLQE NTLFEAFKKG VVDIYPEGSA TKWARAYDFP
AVRSGDVIKE TFKPKTPSGM LGFVFNTRRP VFDNIKLRQG LALVFDFEWV NKNLFDGAYT
RTQSYWQNSS LSFLGVAADN RELDLMGDVR ERINPAILDG SYRLPVTDGS GRDRNVLREA
VTLLREAGYS IKDGKMVDGN GTPLAFEIMS QNAGQEKIAL AYQRFLAPLG IVARVRTVDD
SQYQLRSQSF DYDVIIKSFP SSLSPGLEQI NRWSSRTRDR QGSDNFAGVA DKDVDKLINN
ILQARNPDDF TAAVRAHDRL LVNNSYVVPL YHLDAQWIAR WKRIGRPTAE PLYGYQLPSW
WDERVQ
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