Gene Smed_1369 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1369 
Symbol 
ID5322220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1449480 
End bp1449941 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content56% 
IMG OID640790312 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001327052 
Protein GI150396585 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.362978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGCT TGGATGCTAT CGATCGTTCG ATTCTGCGCA TTCTGCAGCA GGATGGCCGC 
ATCTCGAATG CCGACCTTGC CTCGAGGGTC GGCCTTTCTC CGTCCGCCTG TTCGCGGCGG
GTCGACATAC TCGAAAAGTC CGGGACCATT GCCGGCTACC ATGCGCGCAT CGCCCACAAG
GCGCTCGATT ACAAGATCAT GGTCATCGTG CACATCTCGC TATCGGGGCA GTTTGCCAAG
ACGCTAACCG AATTCGAAGC CGCCGTGAAA CTGTGCCCGA ACGTGCTCGT ATGTTATCTG
ATGTCCGGAG AATATGATTA TATTCTGCGT GTGGCGGCGA AGGACCTGGA GGACTACGAA
CGCATTCACC GCGACTGGCT CTCGGCGCTG CCGCATGTGG TGAAGATCAA CTCGAGTTTT
TCGCTCCGCG AAATCATCGA TAGGCCGAAT GTCGGCATCT GA
 
Protein sequence
MSGLDAIDRS ILRILQQDGR ISNADLASRV GLSPSACSRR VDILEKSGTI AGYHARIAHK 
ALDYKIMVIV HISLSGQFAK TLTEFEAAVK LCPNVLVCYL MSGEYDYILR VAAKDLEDYE
RIHRDWLSAL PHVVKINSSF SLREIIDRPN VGI