| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1279 |
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| Symbol | |
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| ID | 5322126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1373424 |
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| End bp | 1374722 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640790220 |
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| Product | type III effector Hrp-dependent outers |
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| Protein accession | YP_001326964 |
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| Protein GI | 150396497 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.613819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC CTCTGCTGAC CTATTATGGC GACGACCTCA CTGGTTCCAC GGACGTGATG
GAGGCGCTCG CCACGCGCGG CTGCCCGACC GTGCTTTTCA CCGACATTCC AGGTGAAGAA
TTAGCGGCGC GCTTCTCCGA CCGGCAGGCG ATTGGGATCG CAGGAACCAG CCGCAGCGAA
ACGCCCGAAT GGATGGACAG GAACCTGCCG CCTGTCTTCG AGTGGATGAA GCAGTCAGGG
TCCGTCCTTT GCCATTACAA GGTTTGCTCG ACGTTCGATT CCAGTCCCAA AGCCGGAAGC
ATCGGCCGCG CTCTCGATAT CGGCGCGGCG GTCTTCGATC AGGCTTCGAC CCTTCTGGTC
GTCGGCGCGC CGGAGTTGAA GCGCTATACG GCCTTCGGAC ATCTGTTTGC GCATTTCGGG
CCGGACATCT TCCGGATCGA CCGGCATCCC GTCATGGCCC GCCATCCGGT GACGCCGGCG
GACGAGGCTG ACCTGCGGCA GCACCTGATG CGCCAGACGA GGAAAACGGT AGGACTCGTC
GATTTCGTGC AGTTGAAGAG CCAAACCGCA ATCGAAGAGC TGAAAGCCGT TGCAGTGCGG
AATCCCGTGG CGCTCGTAGA TGTGCTGGAC GAAGAGAGCA AGGTCCGGGC CGGACAACTC
ATCTGGGCCT CGCGCGACGT TTCGCCGTTC ATCGTCGGCT CCTCGGGAGT GGAATATGCG
CTCGTGGCGG AAGCGGCCGG AACGCCGCTT GCGGGAGTGC CCCGCAATAT TTCTCCGCCG
GGAAGCCGTG GACCGATCGC GGTTGTTTCA GGCAGTTGCT CGCCTACCAC CGAACGGCAG
ATCCGCCATG CGATGCAAAA CGGCTTCGAA GGCATTCACG TCGACCCCCG CAGCCTGGTT
GAAGACCAGG AATCGACCGT CGCGAATGCG CTGGTGACCG CGGGTGATGT GCTCGCCAGC
GGGAAAAGCC CGCTGTTCTA CACGGCGATC GGCCAGGCGG ATTACGGCGG CGCGGCGGAA
AGCGGCCATG CCATCGGCTC AGGGCTCGGT CGAATCCTTG CCGAGATTGT CGGGCGCCAT
GGCTTGCGCC GCGCGGTGGT TGCCGGCGGC GATACCTCCA GTCACGCGAT TCGGCGGCTG
GCAATCCAGG CGCTGGAGCT GCTGGTTCCG CTGCCTGGCT GTCCCGGATC ACCGCTTTGT
ACGGCTTCCA CGGAGGCCGG CACCAGGACA CTCGAAATCG CGTTCAAGGG CGGTCAGGTA
GGCACGGATG CCTATTTCAC GATCGTTCGA GACATCTGA
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| Protein sequence | MSKPLLTYYG DDLTGSTDVM EALATRGCPT VLFTDIPGEE LAARFSDRQA IGIAGTSRSE
TPEWMDRNLP PVFEWMKQSG SVLCHYKVCS TFDSSPKAGS IGRALDIGAA VFDQASTLLV
VGAPELKRYT AFGHLFAHFG PDIFRIDRHP VMARHPVTPA DEADLRQHLM RQTRKTVGLV
DFVQLKSQTA IEELKAVAVR NPVALVDVLD EESKVRAGQL IWASRDVSPF IVGSSGVEYA
LVAEAAGTPL AGVPRNISPP GSRGPIAVVS GSCSPTTERQ IRHAMQNGFE GIHVDPRSLV
EDQESTVANA LVTAGDVLAS GKSPLFYTAI GQADYGGAAE SGHAIGSGLG RILAEIVGRH
GLRRAVVAGG DTSSHAIRRL AIQALELLVP LPGCPGSPLC TASTEAGTRT LEIAFKGGQV
GTDAYFTIVR DI
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