| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1255 |
|---|
| Symbol | |
|---|
| ID | 5322102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1345464 |
|---|
| End bp | 1346942 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640790196 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001326940 |
|---|
| Protein GI | 150396473 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.269509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.840691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAG CCGAAGAGAA ATCGTCAATG GCCGATCCGG CGCAGCAGAC TGTTACCAAC
GCGGAGGATG GGCGCTGGAG CGAGCTGCTG CAGCCGCGTC ACTTGGCGGC GACGGTGACA
CTGTGCCTTG GCGTAGCGCT TTTTGCCTTC AACGAGTTCT TCGTGTCGAC GGCGCTGCCC
ACAGCCGTTG TCGAGTTCGG GGGAGCCTCC CTCTTGTCCT GGGCGTTCAC GCTGTATCTC
GTTTTCGCCA TCGTCGGTGG CGCGCTGGCG GCGAATCAGA AAGCTCGATT CGGCGCACGC
AACACACTGG TTGCGGCGGC ACTCGTCTTC GCTACGGGCA CGATCATCGC TACGATGGCG
AGCAGCATGC CTCAGGTTCT TGCCGGGAGG GTTCTCCAGG GGCTGGGCGA GGGCGTCATT
GCAGCTCTAT GCTACGCGCT GATACCGGAG CTTTTCCCGC AACGGCTGGT GCCCAAGATC
TTCGGAGCGG AAGCGATCGT GTGGGCTGGT GCCGCCTTCG GCGGCCCGCT CATATCCGGT
TTGCTGACGG AATACTGGTC GTGGCGCGCG GCCTTCTTCG TCAACATACC TGCGGCCGCA
ATCTTCGTTG TGCTCGTCGT CGCGATCGTG CGCCAGCCGG CGCAAAGCCC GGGAGGGTCT
GCCGGATCGA TTCCCCTGCT GCGTCTGGTG ACTTTCGGCG TCGGGATCTT GCTAGTCTCG
CTTTCAAGCA CGGCGACCAA CGATTATGCG ATGGCGGGTT TGCTGGCGGC AGCGATCGCT
GTGTTCGTCA GCACGGTCCG ACTCGACCGC CGATCGCGGC AGTCTATTCT TCCTTTCGGA
GCCTTTTCGC CCACCCACTC GCTCGGGGCC GGGCTCTGGG TCATCCTTCT GATGCCGCTG
GCGCAAGCCT CGGGCTCCGT TTACCTCGTC TACGCCCTGC AACAGCTATG GGGATTCGGC
CCGACTGCGG CTGGCTTCTC GAACGCCTTG ATGGCCATAT CCTGGAGCCT GACGGCGATA
CTCATCGCGA GCCTCCGCTC TCATGAGATG CGCGTGCAGA TCGTCTGGAC CGGTCCGTTG
ATGCTATGCC TCGGCCTCGT TGGCTTGGCG CTGGCCGTCG GAACCGGCGA ATACAAGCTC
GTCTTCATCA GCCAGGCTGC AATCGGAGCA GGTTTCGGCC TTTGCTGGGG GACGCTGAGC
CAGCTGCTGA TGAACGTCTC GACCATAGAG GAACGCGACA AGACCTCCGC GCTGCTTCCG
ACGCTGCAAT CGGCCGGTTA CGCGATCGGC GCGGCGGTCT TCGGAGCCGT GGCCAATGCC
GGAGGTTTCG ATGAGGGCGC CAGCAATCGG GTGATATCGG CGGCATTACT GGGTGTCTTT
GCAGTTGGCG CAACTCTTGC GGCAGCATCG GTCTTCTTCG GGATCACGAC CCTGCGGCTG
GCCCGATGCG AGGGCAAGGT TCACCAAAAT ATGCCGTAG
|
|---|
| Protein sequence | MSLAEEKSSM ADPAQQTVTN AEDGRWSELL QPRHLAATVT LCLGVALFAF NEFFVSTALP
TAVVEFGGAS LLSWAFTLYL VFAIVGGALA ANQKARFGAR NTLVAAALVF ATGTIIATMA
SSMPQVLAGR VLQGLGEGVI AALCYALIPE LFPQRLVPKI FGAEAIVWAG AAFGGPLISG
LLTEYWSWRA AFFVNIPAAA IFVVLVVAIV RQPAQSPGGS AGSIPLLRLV TFGVGILLVS
LSSTATNDYA MAGLLAAAIA VFVSTVRLDR RSRQSILPFG AFSPTHSLGA GLWVILLMPL
AQASGSVYLV YALQQLWGFG PTAAGFSNAL MAISWSLTAI LIASLRSHEM RVQIVWTGPL
MLCLGLVGLA LAVGTGEYKL VFISQAAIGA GFGLCWGTLS QLLMNVSTIE ERDKTSALLP
TLQSAGYAIG AAVFGAVANA GGFDEGASNR VISAALLGVF AVGATLAAAS VFFGITTLRL
ARCEGKVHQN MP
|
|---|
| |