Gene Smed_1232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1232 
Symbol 
ID5322079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1312774 
End bp1314096 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content59% 
IMG OID640790173 
Producthypothetical protein 
Protein accessionYP_001326917 
Protein GI150396450 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.583385 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.276368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGAC GCGGGGACAG CCGCAACGAA GTGGAGCGTG AGCGCTCGAT CGAAGGAGAC 
AATGGCATGG GAATACTCAT TAACCTCGAT CTCGCAGCCA CGATCGATCC GCTTGACGGG
ATACTGATCG ACATCGCCCG CCGCATCCAA GTCCCCAAGA CGAAGCATGA GGACGCTGCC
GACCACTTTC TCGGTCTCTG CGCTCATGTG GACCGCCAGG GTAGCCCCTT GGAGGGCAAG
GTGATTGAGT GCTATCCATC TGGATCATTC TCGATCGCAG CCGCTATCTA CTCGCGTGTG
AAGTCGATGC AGCACGATGT CGACGTCGTC GTCGAAGTCG ACTTCCCGAT CGGCACGGAT
CCAGAGTGGA TGCTCGACAA GCTCTACGAA GCAGTGAAGG GCGATGCCGG GAGCCGCTAC
TACGACTTCA AGGTGGCGCG GAATTCACGC TGCGTAACGG TTACCTATCC CGACGGTGTC
ACCGTCGACC TCATGCCCGT AGCCCGGATT CTCGGCGGCC CCGAGCGTTC GGGCGTGCTT
TTCCACCATA ATGCCAAGCG GGCTGAGAAG TACCGGAAGG AAGTTAATCC GAAGGCATTT
ACGCTCCACT TCAACGCTCG CATCAAGTCC AGCGACGTTT TTGCATCCCG TTACCGGACG
CGGAGGCTTC TCTCAGATGG ATTGCTGCAG GAGCGCGCCG AGACGCAGCC GATGCCCGAG
CACGTTCCGA TCGAGGAGAA GTCGCCCCGT CTGGTTGCGA TCCAGTTGCT GAAGCGCTTC
CGGGACATCC AGTTCCGCGG TCGCGACGGC CGATGCCCAC CCTCTGTGGT GATTGCAGCC
ATGGCACTGG ACGCTGGTCA GATGAGCGAC AGCCTGTGTG ACGAATTGAT CGCCATTGCA
ACCCACATGC AGCGGGAGAT CGAAGAAGCG GAGCGAGACC TTAGCAAACT GGTGGTCGCG
AACCCTGCGC ATCCGGTAGA TATCTTCACT GACCGTTGGC CAGAAGACAG GAGCGCTCAA
CGCCTCTGGC GGGATGATTT GATCCGCCTC GTCCGGCATC TCAGGACACT GCGGGGCCGC
GACTGGGATC CTCGGCAGCT CAAGAACGTA CTGCAGGAAC TGTTCGGCGA GACGCCTGCA
GAGCGGGCAT TCGAAGATCA CTATCGAGGC CAAAGCGCCT TGGCGAAGCA GAACATGCTC
GGCATCACGA GATCAGGGGC GGTGAGAAGC GCGATCGCGA CACCGGCTAT CTCCAGCGGC
CTTATCGTCC CTGCAAGAGC AAATACCGAC ATGGGCGGCT ATATTGAAGA TCCTGTCGAT
TGA
 
Protein sequence
MIRRGDSRNE VERERSIEGD NGMGILINLD LAATIDPLDG ILIDIARRIQ VPKTKHEDAA 
DHFLGLCAHV DRQGSPLEGK VIECYPSGSF SIAAAIYSRV KSMQHDVDVV VEVDFPIGTD
PEWMLDKLYE AVKGDAGSRY YDFKVARNSR CVTVTYPDGV TVDLMPVARI LGGPERSGVL
FHHNAKRAEK YRKEVNPKAF TLHFNARIKS SDVFASRYRT RRLLSDGLLQ ERAETQPMPE
HVPIEEKSPR LVAIQLLKRF RDIQFRGRDG RCPPSVVIAA MALDAGQMSD SLCDELIAIA
THMQREIEEA ERDLSKLVVA NPAHPVDIFT DRWPEDRSAQ RLWRDDLIRL VRHLRTLRGR
DWDPRQLKNV LQELFGETPA ERAFEDHYRG QSALAKQNML GITRSGAVRS AIATPAISSG
LIVPARANTD MGGYIEDPVD