| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1165 |
|---|
| Symbol | |
|---|
| ID | 5322011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1242134 |
|---|
| End bp | 1242802 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640790106 |
|---|
| Product | sec-independent translocase |
|---|
| Protein accession | YP_001326851 |
|---|
| Protein GI | 150396384 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1826] Sec-independent protein secretion pathway components |
|---|
| TIGRFAM ID | [TIGR01410] twin arginine-targeting protein translocase TatB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.151215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.188357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATA TCGGCTGGAC CGAGCTTGTT GTTATCGCAA TCGTCTTGAT TATCGTCGTC
GGGCCGAAGG ACCTTCCGCC GATGCTGCGC GCGTTTGGGC GGATGACGTC CAAGATGCGC
GGCATGGCGT CTGATTTCCG GCGACAGTTC GATGAGGCTT TGCGTGAAGC CGATCTCGAC
GAGGTTCGAA AGACGATCAG CGACGCGCAA AGCCTTAACC CGACGACGGC GTTGCGAGAT
GCGATGAACC CGCTGCGGCA GCTCGGAAAC GAAATCAAGT CCGATCTTCA GAAGGCGACC
ACGCCCGATA AAGCGTCAGA ACCGCCTGCT CCGGAGCCGT TGGTCGAGCC GGCTAGGACC
GAGGCGGTCG GCGAGACGGC TGCGAAGGGA ACGGATAAAG TGACGGCGGC TGCCGTAAGC
TCTGCATCCA GACAGATGGA CCGCGCCGCC GAGGCTTCGA AGGCAAGCGA ACCGAAAGCT
GCCGCCAAGC CCAAAACGGC GTCGAAGAAG TCGGCCGCCC CGTTGAAGAA GCCACGCGCT
TCGGCCGCGG CGGACGCCGC TGGCGAGGCG CGCCCGAAGA AGTCGCCGGC GCGCAAGGCG
CCGAGCGAGG CGTCTCCCGT GAGCAAAGCG AAGACGCGTG CGGTTTCGCG TAAGAAAGGT
GATGCATGA
|
|---|
| Protein sequence | MLDIGWTELV VIAIVLIIVV GPKDLPPMLR AFGRMTSKMR GMASDFRRQF DEALREADLD
EVRKTISDAQ SLNPTTALRD AMNPLRQLGN EIKSDLQKAT TPDKASEPPA PEPLVEPART
EAVGETAAKG TDKVTAAAVS SASRQMDRAA EASKASEPKA AAKPKTASKK SAAPLKKPRA
SAAADAAGEA RPKKSPARKA PSEASPVSKA KTRAVSRKKG DA
|
|---|
| |