Gene Smed_0987 details

Gene Information

• Locus tag: Smed_0987
• Symbol: rplD
• ID: 5321832
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 1069015
• End bp: 1069635
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640789929
• Product: 50S ribosomal protein L4
• Protein accession: YP_001326675
• Protein GI: 150396208
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.114211
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.0168487
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATCTCA CCGTCAAAAC CCTCGAGGGC AAGGACGCAG GAAAGGTTTC CCTTTCCGAC 
GCCATTTTCG GTCTCGAGCC TCGTGAAGAC ATCATCGCCC GCGTCGTTCG CTGGCAGCTC 
GCAAAGCGCC AGCAGGGCAC GCACAAGGCC AAGGGCCGTG CGGAAGTTTC CCGCACCGGC 
GCCAAGATGT ACAAGCAGAA GGGTACGGGC CGCGCCCGCC ACCATTCCGC TCGTGCTCCG 
CAGTTCCGCG GCGGCGGCAA GGCCCATGGG CCGGTTGTCC GCAGCCATGC GCACGATCTT 
CCGAAGAAGG TGCGTGCACT CGGCCTGCGT CATGCGCTGT CGGCCAAGCT GAAGGCCGAG 
GAGATCATCA TCGTCGACGA TCTCGTCGCC AACGAAGCAA AGACGAAGGC ACTCGCCGGC 
GCGTTTGCAT CGCTCGGCCT CACCAATGCC CTGATCATCG GCGGAGCCGA GATCGAGGGC 
AACTTCAAGC TCGCCGCGCA GAACATTCCG AATGTGGACG TTCTGCCGGT TCAGGGCATC 
AACGTTTACG ACATTCTGCG CCGTGGCAAG CTCGTGCTTT CCAAGGCTGC TGTGGAAGCT 
CTGGAGGAGC GGTTCAAATG A 

 

Protein sequence

MDLTVKTLEG KDAGKVSLSD AIFGLEPRED IIARVVRWQL AKRQQGTHKA KGRAEVSRTG 
AKMYKQKGTG RARHHSARAP QFRGGGKAHG PVVRSHAHDL PKKVRALGLR HALSAKLKAE 
EIIIVDDLVA NEAKTKALAG AFASLGLTNA LIIGGAEIEG NFKLAAQNIP NVDVLPVQGI 
NVYDILRRGK LVLSKAAVEA LEERFK