Gene Smed_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0820 
Symbol 
ID5321657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp883300 
End bp883842 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content62% 
IMG OID640789757 
ProductGCN5-related N-acetyltransferase 
Protein accessionYP_001326511 
Protein GI150396044 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.350892 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.227447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAGCG TGCCTACTAT CGAGACAGAG CGGCTCCTTC TGCGCCCCTA CCGGCGCGAT 
GATTTCTCCT CCTATTGCGC ACTCTTCGGA AACGAGGACG TAACCCGCTA CGCCGGCGGC
ATGCCCTACA CGCGCGAGCA AGCCTGGACA CGTTTCCTGC GTCAGGTCGG CATGTGGCAC
TATTTCGGCT TCGGCTTCTT CGCCATCCAG GACAAGCAAA GCGGTGCATT CATCGGCGAG
GCAGGCTTCC ACGAGGCACA TCGCCAGATT ACACCCTCGC TCGAGGGAAC GATGGAGACC
GGCTGGGCGA TTTCCCCGAA GAACCATGGC CGCGGCCTCG CGACCGAAGC CGTGACCGCG
GCCCTCGCCT GGGCCGACCG CGAATTCCCC ACGCTGAGGA AGACCTGCAT CATCGAACCG
GGCAACCAGG CTTCCATCAA CGTCGCGCTC AAGCACGGCT TCAAGGAGTT CTGGCGCACG
ACTTATAACG GCCGGTCGAT GTTGATGTTC GAGAGGCGCT CGAAGGCGCC GGCAGGCCTA
TAA
 
Protein sequence
MHSVPTIETE RLLLRPYRRD DFSSYCALFG NEDVTRYAGG MPYTREQAWT RFLRQVGMWH 
YFGFGFFAIQ DKQSGAFIGE AGFHEAHRQI TPSLEGTMET GWAISPKNHG RGLATEAVTA
ALAWADREFP TLRKTCIIEP GNQASINVAL KHGFKEFWRT TYNGRSMLMF ERRSKAPAGL