Gene Smed_0814 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0814 
Symbol 
ID5321651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp877110 
End bp877622 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content58% 
IMG OID640789751 
ProductMarR family transcriptional regulator 
Protein accessionYP_001326505 
Protein GI150396038 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.304644 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACCA AGATGAAGCC GCAGTTTGTT GCCCCCAGAG ACCCGCAGGA AGACACGATC 
CGTGGTCTCT ACATGGAATC CCTCCACCTC GTCGAGCGTC TGCATCGCCG CCTGCTCGAC
GTCATCAAGG ATGAGTTCGA CCGTCAGGGT CGCAGCGACG TCAATGCCGT TCAGGCACTC
CTGCTGTTCA ATATCGGGAA TTCCGAACTG ACCGCCGGCG AACTTCGCTC CCGCGGCTAC
TATCTCGGCT CCAACGTTTC CTACAACGTC AAGAAACTGG TCGATCTCGG CCTGATCAAC
CACCAGCGCT CCCGCGTCGA CCGCCGTTCG GTTCGCATCA GCCTTACGGA AGATGGGCAG
GAGATCGCGG AAACGGTCGC CAAACTCTAT GAGCGCCATA TCGGCTCGAT CCAGAAGGTT
GGCGGCATCG GCAGCGATGA GTTCACCCAG ATGAACAAGC TCCTGCAGCG TCTCGACCGC
TTCTGGAACG ACCAGATTCT GTATCGCCTC TAA
 
Protein sequence
MNTKMKPQFV APRDPQEDTI RGLYMESLHL VERLHRRLLD VIKDEFDRQG RSDVNAVQAL 
LLFNIGNSEL TAGELRSRGY YLGSNVSYNV KKLVDLGLIN HQRSRVDRRS VRISLTEDGQ
EIAETVAKLY ERHIGSIQKV GGIGSDEFTQ MNKLLQRLDR FWNDQILYRL