Gene Smed_0704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0704 
Symbol 
ID5321541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp759849 
End bp760385 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content65% 
IMG OID640789641 
Producthypothetical protein 
Protein accessionYP_001326395 
Protein GI150395928 
COG category[R] General function prediction only 
COG ID[COG5350] Predicted protein tyrosine phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.200895 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.482202 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGTA TCGTGGTCTC GCCGCTTCGG CGCATCGCGG AAATGGCCGT GCGGCACGGC 
TGCCGCGAAA TGTTGAGCCT GCTTGCGAAG GGGCAGGATT TTCATCGCCC TGCCGTCATC
GATCAGGCGA AGCATCTGAA GATCGGCGTC AACGACATTA CCTTTGCGGG AACGGGCGGT
CTGATCGCCC CCCAGGAAGA ACATGTTCGC GGGATCATCG GCTTCGCCCG TAACTGGGAC
CGGACAAGGC CAATGCTCAT CCACTGCTGG ATGGGGGTCT CCCGTTCGCC TGCGGCCGCG
CTGATCGCAG CGCTTGCAGT CGAGCCGGAC CAGGACGACC ACGCGCTCGC ACGGCGCCTC
CGGCTTGCTT CGCCCTTCGC GACGCCGAAT GCGCGGCTCG TCGAATTCGG CGACGAGGCC
TTGTCGCGCA AGGGCCGGCT CGTCGATGCG GTGCGGTCCA TCGGACGCGG CGCCGATGCC
GACGGCAATG CACCCTTCAT CCTGCCTCTT GTGGAAGACT TGCAACATGT CGGGTGA
 
Protein sequence
MTGIVVSPLR RIAEMAVRHG CREMLSLLAK GQDFHRPAVI DQAKHLKIGV NDITFAGTGG 
LIAPQEEHVR GIIGFARNWD RTRPMLIHCW MGVSRSPAAA LIAALAVEPD QDDHALARRL
RLASPFATPN ARLVEFGDEA LSRKGRLVDA VRSIGRGADA DGNAPFILPL VEDLQHVG