| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0672 |
|---|
| Symbol | |
|---|
| ID | 5321509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 723414 |
|---|
| End bp | 725471 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640789609 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001326363 |
|---|
| Protein GI | 150395896 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.380192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATACGCG GAACGGTCAT TCTGCCGGTC GCTGCCATGC TCGCAGCGGG TATGCTCGGT
CTTTCGGCCA ACGCTGCCGA GGGGCCCATC CCCCTACCGG CCGGCAGACC TGAGCCAGCC
GGCGCGTCTG CTCGCCCGAT TGCAGGCGAA AACACAATCG CCGCAGTGCC CCGCGTCGCA
GATCTGAAAA GCGGTCTTGA TGCCCTCTCG GACCGTCAGC CCGCAAGGGC GATCGCCATT
CGCGACCGCA TGCCCGCGGG GACTCTCGAC CGCCATATCC TCGCCTGGGC CATCGCCGTT
TCCGGACAGA AAGGCATCCC GTCCTACGAC ATTGCCGCTG CACAAGGAGA ACTCGGGGGC
TGGCCGGGGT TGAAATCGCT CCGCGCCCAT TCGGAACGTG CCCTTTACCG CGAGAGCCCG
CCGCCGGCCG ACGTGGTCGC AGCCTTCGGC GCGACCCGCC CGGAGACAAC GGAAGGGGCG
ATTGCTCTTG CGCGAGCGCT CGTGGCGCAG GGGCGGACCT CGTCTGCAGC CACGCAACTG
CGCGCGTTCT GGCTGAACGA AATTCTGGAC AAGGAAACCG AAACGAAAAT TCTCTCCGAA
TTTTCACATT TGCTGACGGC GGAGGACCAC AGGCGGAGGA TGGAGATGCT TCTCTACCGC
GCTCGCGTGG ACCAAGCCGA ACGGTTCGGC ACGCTCGGCA GGGCGCAATC CCTGTTCCGC
GCCTGGGCTG CAGTCATTCG CGACGGCAGC AACGCAGCCT CCCTCATAGA CGCCGTTGAT
CCCTCCTGGC GCAGCCAGCC GGCCTACCTC TTCATTCGCA TCGAACATTT GCGCAAGCGG
CAGAAATATG CCGAAGCGGC TGAGCTTCTT GATCAGATGC CGAAGGACGA CACCGCGCTC
GTCAATCCGG GAGAATGGTG GGTCGAGCAG CGTATCGTCA GCCGCGGTCT GCTCGACAGT
GGCGACTTTC GCGGAGCTTA CCGCATTGCT GCCAACCACG CAGCAAGGCG CGCTACGGAC
CTCGTGGACG CGGAATTCCA TGCAGGCTGG TATGCGCTTC GCGGCCTCGA GGAGGCCGAA
ACGGCCGCAC GGCACTTTCG CAAGATTCTT GATGCATCGA GCCGTCCGAT CTCCGCCTCG
CGCGCCTGGT ACTGGTTGGG GCGAGCGGCC GAGGCGGGCG GGCCCGGCGA CGCGCGGGAA
TATTTCAACA ATGCGGCGCG CTATTCGGCG ACCTTTTACG GCCAACTCGC CGCTGCGCGA
CTCGGCCACT CGAAGCTCGA CATGAGCTAC CCTTCGCCGA CGCAAGAAGA CCACATCCGC
CTGGAAGGCC GCGAGGCGGT AAAGGCGATC GGCCGGCTCG AAGCGGCCGG CCATGGCTGG
CGTGCCGAGA GCCTGTATCG CGCCCTTGCC GAAGAATTGA CCAGTCCCGG CGAGCTTGCG
ATCCTTGCGG CACGAGCCGA AAAGGCGGGC AATCACCAGC TCTCGCTGCA GATCGGCAAG
ATTGCCTTCG GCCGCGGCAT AGAGGTGGCG GCACTCGCCT TTCCGATCGG AGTCATCCCA
CCGAGTGCGG ACATCGACGG TGCCGGCAAG GCGCTCGCCT ATGCCATCGC CCGCCAGGAA
AGCGCTTTCA ACCCGGCGGC GATTTCGGTG GCGAATGCCC GCGGTCTTCT GCAGCTGCTT
CCCGGCACGG CCAAGGGGGT CGCTAATCGT TATGGTCTTG CCTATTCGAA GGACCGCCTG
ACGAGCGATG CCGGCTACAA TGCGACGCTT GGGGCCCATT ATCTCGGCGA GCAGATCGAC
AGCTTCGGCG GGTCCTACAT TCTCACCTTC ATCGCGTACA ATGCCGGCCC GCGCCGCGTC
CCTGATTGGC TCGCCCGCTA TGGCGATCCG CGCGGCAAGC CCATCGACGA GGTCGTCGAC
TGGATCGAGC GCATCCCCTT CGAGGAAACG CGCAACTATG TCCAGCGCGT CATGGAAAAC
TATCAGGTCT ACAAGTCGCG TCTCGGACAG GAGACGGATA TCGTCTCGGA TTTGAGGATA
GGGCGAGAGG CGCCCTAG
|
|---|
| Protein sequence | MIRGTVILPV AAMLAAGMLG LSANAAEGPI PLPAGRPEPA GASARPIAGE NTIAAVPRVA
DLKSGLDALS DRQPARAIAI RDRMPAGTLD RHILAWAIAV SGQKGIPSYD IAAAQGELGG
WPGLKSLRAH SERALYRESP PPADVVAAFG ATRPETTEGA IALARALVAQ GRTSSAATQL
RAFWLNEILD KETETKILSE FSHLLTAEDH RRRMEMLLYR ARVDQAERFG TLGRAQSLFR
AWAAVIRDGS NAASLIDAVD PSWRSQPAYL FIRIEHLRKR QKYAEAAELL DQMPKDDTAL
VNPGEWWVEQ RIVSRGLLDS GDFRGAYRIA ANHAARRATD LVDAEFHAGW YALRGLEEAE
TAARHFRKIL DASSRPISAS RAWYWLGRAA EAGGPGDARE YFNNAARYSA TFYGQLAAAR
LGHSKLDMSY PSPTQEDHIR LEGREAVKAI GRLEAAGHGW RAESLYRALA EELTSPGELA
ILAARAEKAG NHQLSLQIGK IAFGRGIEVA ALAFPIGVIP PSADIDGAGK ALAYAIARQE
SAFNPAAISV ANARGLLQLL PGTAKGVANR YGLAYSKDRL TSDAGYNATL GAHYLGEQID
SFGGSYILTF IAYNAGPRRV PDWLARYGDP RGKPIDEVVD WIERIPFEET RNYVQRVMEN
YQVYKSRLGQ ETDIVSDLRI GREAP
|
|---|
| |