Gene Smed_0653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0653 
Symbol 
ID5321489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp706062 
End bp706463 
Gene Length402 bp 
Protein Length133 aa 
Translation table11 
GC content61% 
IMG OID640789589 
ProductHxlR family transcriptional regulator 
Protein accessionYP_001326344 
Protein GI150395877 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.174756 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGTC CCCGCGCGAA ACTGACGAAC ACATTTCCGG GCTGTCCAGT GGAGTCGGCC 
TTGAGCTTCA TCGACGGCAA ATGGAAGGGC GTCATTCTCT ATCACCTGAT GAGCGAAGGC
ATCCTGCGCT TCAACGAGCT GCGCAGAAGG CTGCCGAGCG TGACGCCACG TATGCTGACC
AGGCAGTTGC GTGAACTGGA GGAGGCGGCG CTGCTGTCGC GCACGGTCTT TCCGGTCGTT
CCGCCGCGTG TCGACTACGC TTTGACGGCA AGGGGAGAAA GCCTGAAACC GGTGATTATG
GCCCTGAAAG CCTGGGGCGA CGAGAATGTT CTCTGCGACG GAGACCGGAT GACGCTGAAG
CCGGCCGAAT CCCGATCACG GCCGGAACGC AAACGGGCCT GA
 
Protein sequence
MSRPRAKLTN TFPGCPVESA LSFIDGKWKG VILYHLMSEG ILRFNELRRR LPSVTPRMLT 
RQLRELEEAA LLSRTVFPVV PPRVDYALTA RGESLKPVIM ALKAWGDENV LCDGDRMTLK
PAESRSRPER KRA