Gene Smed_0603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0603 
Symbol 
ID5321439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp653060 
End bp653554 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content57% 
IMG OID640789539 
ProductUspA domain-containing protein 
Protein accessionYP_001326294 
Protein GI150395827 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.784504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGACG GTAAGCTGAG GGAGGCGCCG CATTGGGGTG CGGCGTGGCA ACATAGGAAG 
GGACGTAATA GCATGTACAA AAAGATCATC GTGCCGATCG CCATGGATCA GCTGGAGCAT
GGCGAGTCCG TTCTCGGCAT TGCGGTGAAG CTGATCGATG AAGGGGGAGA GATCATTCTG
CTCAATGTCG TCGAGGATCT CAACGCCTAT GCACAAGGCT ATATGATCGT CGATTTTCCG
CTGGAGATGA TCGAAGAATC GCGCAAGCAC GCGGTCAAGA CCCTGGAAGC ACTGAGGACC
AAGCACGGCA TCAACGGACG CGTGGAAATC CGCACAGGCG GTGCGGCAGG CAGCATCAAC
GCCCTTGCAA AGGAAGAGAA TGCCGACCTG GTGATCATCG CGTCGCACCG ACCGGGCTTG
ATCGATTACT TCATCGGATC CACCGCCAGC CGCGTCGTCA GCCATTGCCC CTGCGCGGTT
CTCATCGATC GGTAA
 
Protein sequence
MTDGKLREAP HWGAAWQHRK GRNSMYKKII VPIAMDQLEH GESVLGIAVK LIDEGGEIIL 
LNVVEDLNAY AQGYMIVDFP LEMIEESRKH AVKTLEALRT KHGINGRVEI RTGGAAGSIN
ALAKEENADL VIIASHRPGL IDYFIGSTAS RVVSHCPCAV LIDR