| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0567 |
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| Symbol | |
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| ID | 5321403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 615148 |
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| End bp | 616947 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640789503 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001326258 |
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| Protein GI | 150395791 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.75252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.598217 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCCG CCCCCGCAGA AGTCCTGTCG CTCCGCCGCT TCGGCGACGA CCAAATCGTG
ACGCTTGCCA AACTCGTCAT CGAAAATGCC CTGCAGCCGA TCGTAGAAGC GACGACCGGG
GCGGTGTTCG GCTATGAATC CCTGATGCGC GGCTTCGAAC GGCTGGGGTT TGCCTCACCG
GTCGAACTGC TCGACAGGGC GGAGAGCGCG GGGCAGTTGC TGGCGCTCGA GCACCTGATC
AACAGCCGCG CCGTCGCCGC CTTCGCGAAC CTTCCCGATT TCTCGGCGCG TACGCTCTTC
CTCAATTTCG ATGCACGGCT CGTCGGCGAC GAGGGGGACA TCGTCGATCG CCTCGTCAAC
CACTTGAAGC GTGCGAATAT CCCGCCATCC TCCCTTTGCT TCGAACTCTC GGAACGATTC
GACAGCAGCA ATATGCCGGA CTTTTCGGTG CTCGTGCGGC AACTGCGGCT TGCCGGCTTC
AAGCTCGCGA TCGACGACTT CGGCGCCGGG TTCAACGGCC TGAAGCTGCT CTGCGATCAG
CCGGTAGATT ATGTCAAGAT CGACCGGCAT TTCGTCTCTG GCATCGACAA GGACCCACGC
AAACGTCACC TCGTTCGCCA CACGGTCAAC ATGGCCCACG TACTCGGGAC CCGGGTGATC
GCCGAGGGTG TGGAAACGGA GTCGGAGTTT CTCGTTTGCC GCGATTTGGG TTGCGATCTC
ATGCAGGGCT ATTTCATCGC CCGGCCGACG ACGCACCTCA CGGAACTGCA GGCCGTCTAT
TCCCATCTCG AGCCGGTGGG CAGCATCCGG CGGGCCTCTT CGACGCTCGA CAGCATCCTG
ATCCGGAAGG AAATCGAGCA GCTTCCGGCG GCGAGGGAGA GCGACGACCT CGATTCCGTG
TTCGACCTTT TCCGGCTCAA TCCGCGACAG GCTTTCTTTC CGGTGCTGAA TGCCAATGGA
GAACCCCGCG GCATCCTGCA CGAATACCAC GTCAAGGAGA TGATCTATCA TCCCTTCGGT
CGCGACCTCC TGAAAAACCG CATCTATCAG CGCCGCATCT CGCATTTCGT AACGCCCGCG
CCGATCGCCG ACCTCGATAC GCCCGCGGAC GAAATGCTCA AGATTTTCGC AGGCATGGAT
GGTAGCGATT GTGTCATCCT GACGGAGAAC ATGCGCTATG CCGGGATTCT CTCGGCTTCG
TCGCTCCTGA AGATCATCAA CGAGAAGCAG CTGAAGATGG CACAGGAGCA GAATCCGTTG
ACTGGCCTTC CCGGCAATCG GGCGATCCGC GATTACGTCC AGCATGCAGT CCTGGACGGC
GACCGGGCCC GCTATTTCTG CTATTGCGAT TTTGACGACT TCAAGCCCTT CAACGACACC
TACGGCTTTC AGAAGGGAGA TCTCGCGATC ACCCTCTTTG CGGCGCTTCT GCGGCGTCAT
TTCATCGGCG AGGAAAAGTT CCTGGGTCAC GTTGGAGGCG ACGATTTCTT CATCGGTATC
GACGGTTGTA CCGAGGAAGA GATCCGGGCC GTCCTTAGAC GTCTGATCGA CGATTTCCGT
TCGGACGTCC GCCAACTCTA TTCGCCCGAG CATGTGTCGG CGGGACGGAT CAGCGGATAT
GGTCGCGATG GAGTGACAAA GGATTTTCCC CTGATGCGCT GTTCCATCGC CGTCCTCGTG
CTGCCGGAAG GCCTTGTGCT CTCGGATGGC CAGGCTGTCA GCAAGCGGAT CGCGGAGATA
AAGACGCGCG CCAAGGAAAG CGACAATGGC GTCGTGCTGG AGCCGCTCGA CCGTACCTGA
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| Protein sequence | MSAAPAEVLS LRRFGDDQIV TLAKLVIENA LQPIVEATTG AVFGYESLMR GFERLGFASP
VELLDRAESA GQLLALEHLI NSRAVAAFAN LPDFSARTLF LNFDARLVGD EGDIVDRLVN
HLKRANIPPS SLCFELSERF DSSNMPDFSV LVRQLRLAGF KLAIDDFGAG FNGLKLLCDQ
PVDYVKIDRH FVSGIDKDPR KRHLVRHTVN MAHVLGTRVI AEGVETESEF LVCRDLGCDL
MQGYFIARPT THLTELQAVY SHLEPVGSIR RASSTLDSIL IRKEIEQLPA ARESDDLDSV
FDLFRLNPRQ AFFPVLNANG EPRGILHEYH VKEMIYHPFG RDLLKNRIYQ RRISHFVTPA
PIADLDTPAD EMLKIFAGMD GSDCVILTEN MRYAGILSAS SLLKIINEKQ LKMAQEQNPL
TGLPGNRAIR DYVQHAVLDG DRARYFCYCD FDDFKPFNDT YGFQKGDLAI TLFAALLRRH
FIGEEKFLGH VGGDDFFIGI DGCTEEEIRA VLRRLIDDFR SDVRQLYSPE HVSAGRISGY
GRDGVTKDFP LMRCSIAVLV LPEGLVLSDG QAVSKRIAEI KTRAKESDNG VVLEPLDRT
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