Gene Smed_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0540 
Symbol 
ID5321374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp583643 
End bp584326 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content64% 
IMG OID640789474 
Productregulatory protein ArsR 
Protein accessionYP_001326231 
Protein GI150395764 
COG category[K] Transcription 
COG ID[COG0640] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.60419 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.57949 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGAAG GTCCGGACAT AGCTTTGATC GGTTCGTTGA TCGGCGATCC TGCGCGCGCG 
AATATGCTGA CCGCCCTGAT GGGCGGCCAG GCGCTGACAG CGACCGAGCT TGCGGCACAA
GCCGGCGTCA CGCTGCAGAC GGCCAGCTCG CACCTGGCCA AGCTGGAGGC GGGCGGCCTG
CTGACTCAGC GAAAACAGGG CCGGCACCGC TATTATGCCC TGAGCGAGGA CGAGGTCGGC
CTGATGCTCG AGAGCCTTAT GGGTTTCGCC GCCGGAAAAG GTCTGACGCG GTCGCGGCCC
GGACCGAAGG ACCCGGCGCT GCGTAAAGCG CGTGTCTGCT ACAACCATCT CGCTGGCGAT
TATGGCGTGC GGATGCTGGA CAGCCTGATC GCCGCCAGGC AAATCGAAAT GACAGATGAC
GACGATCTGG CGCTGACCGA TGCGGGGCGG ATCCGCGTCG AGTCGCTCGG GGTCGACTAC
GCCGCGCTCA GGAAATCCCG TCGGCCTATC TGCCGCACCT GTCTCGACTG GAGTGAACGG
CGGTCGCATC TGGCCGGTTC GCTCGGAGAG GCACTGCTGA CGCTCTTCAT TGAAAACGGC
TGGGCGAAAC GGGAGCAGAA CAGCCGGGCG ATCCTCTTCA CGGCGGCGGG CGAAAAGGCG
TTTCTTGAAC TCTTTCCCCG ATGA
 
Protein sequence
MKEGPDIALI GSLIGDPARA NMLTALMGGQ ALTATELAAQ AGVTLQTASS HLAKLEAGGL 
LTQRKQGRHR YYALSEDEVG LMLESLMGFA AGKGLTRSRP GPKDPALRKA RVCYNHLAGD
YGVRMLDSLI AARQIEMTDD DDLALTDAGR IRVESLGVDY AALRKSRRPI CRTCLDWSER
RSHLAGSLGE ALLTLFIENG WAKREQNSRA ILFTAAGEKA FLELFPR