| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0498 |
|---|
| Symbol | |
|---|
| ID | 5321332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 541675 |
|---|
| End bp | 542076 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789432 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001326189 |
|---|
| Protein GI | 150395722 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.22351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGCA TAGAGCGGGA AAATGTCACG GAGATCCGCA TTCCGTTCCG CGATATAGAC
ATGCATGGTC ACATGCACAA TGCAGCCTAT TATGCGCATG CCGAAGCGGC GCTCGCCAAT
CTCTGGCGGC ACCGGCCGGC AGTCGCTGAG GAACCGGCCT ATCTCGTCCG CCGCTCCGCC
TGCATCTTTC ACCGCGGCCT GCGTTTCGAT GAGCCTGCAC GCTTCACCGT TACCGTCGCG
AAAATCGGCG GCAGCTCGGT AGGTTTCGCT GTGCGCGTCG AGACCGGCGA CAAGCTTTCG
GCGGAGGTCG AGATCGTTTG GGTGGCGGTC GATCGTGCCC GCCATCAACC GGTACAACTG
CCGGCGCCAA CTCGGGAATG GCTCGCCGGC TACAGCGTCT GA
|
|---|
| Protein sequence | MDGIERENVT EIRIPFRDID MHGHMHNAAY YAHAEAALAN LWRHRPAVAE EPAYLVRRSA
CIFHRGLRFD EPARFTVTVA KIGGSSVGFA VRVETGDKLS AEVEIVWVAV DRARHQPVQL
PAPTREWLAG YSV
|
|---|
| |