| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0418 |
|---|
| Symbol | |
|---|
| ID | 5321252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 450625 |
|---|
| End bp | 451509 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640789353 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001326110 |
|---|
| Protein GI | 150395643 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.655345 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA AGCTATCCAC GACTCGCAAG GTTGCGGCGA ACAAGGGGGA GCCGACCATC
GCGCTTGCGC TGGGAGGCGG CGGTGCCCGT GGGCTTGCCC ATATTCACGT CATCGACGCG
CTTGACGAGA TGGGCCTTCG GCCGGCGGTG GTCGCCGGTT CGTCGATCGG CGCGCTCATG
GGAGCCGGCG TGGCGGCCGG CATGAGCGGG AAGGAAATTC GCGAGCATGT GCTTTCGACC
GTCGGTCGCC GCGGGGAGGT GCTCAACCGG CTGTGGCGAT TAAGGCCGGC AAGTCTTGCT
GAAGCCATGG CGAGCGGCTT CCGCTTCGGC CAGTTCAACA TAGAGCGCGT GCTGAAGGCC
TTTCTGCCTG ACGCAGTGCC CGTCCGCTTC TCCGATCTGG CCCTCCCCTT GAAAATCATC
GTCACGGACT ATTACGGGCA GACGGAAAGC GTCTGCGAGA GCGGCGATCT TTACAAGGCG
CTTGCCGCCT CCTGCGCCCT ACCTGCGGTT TTCATGCCGG TGAAGATCGA TGGCCGCGTG
ATGATCGACG GCGGGATCTA CAATCCAATT CCCTTCGATC ACTTGCGGGG ACTGGCCGAC
ATCGTCATCG CCGTCGATGT CGTCGGCGGG CCCGATGGGG ATGGCGAGAC GATCCCCAGC
CGCATCGACA GCCTGTTCGG CGCGACCCAG TTGATGATGC AGTCGATCAT CACCATGAAG
ATGCAGGCCG GCGCTCCGGA CATTCTCCTC AGGCCCGATG TGGGGCGGTT CCGCGTGCTC
GATTTCCTGC GGGCGCAGGA GTTGCTTACC GCCACCAGCC GTACCAAGGA TGAAACGAAG
CGCGCGTTGG CAGAACGCAT AGAACAGTGG AAGAAGGGAA TGTAG
|
|---|
| Protein sequence | MDQKLSTTRK VAANKGEPTI ALALGGGGAR GLAHIHVIDA LDEMGLRPAV VAGSSIGALM
GAGVAAGMSG KEIREHVLST VGRRGEVLNR LWRLRPASLA EAMASGFRFG QFNIERVLKA
FLPDAVPVRF SDLALPLKII VTDYYGQTES VCESGDLYKA LAASCALPAV FMPVKIDGRV
MIDGGIYNPI PFDHLRGLAD IVIAVDVVGG PDGDGETIPS RIDSLFGATQ LMMQSIITMK
MQAGAPDILL RPDVGRFRVL DFLRAQELLT ATSRTKDETK RALAERIEQW KKGM
|
|---|
| |