| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0393 |
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| Symbol | |
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| ID | 5321227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 421682 |
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| End bp | 422578 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789328 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001326085 |
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| Protein GI | 150395618 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00156411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.514567 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCATT TAGGCGATCT CGAGATTTTT GCGCGGGTCG TGTCGACCGG CAGCATGTCG
GCCGCAGGAC GGGCGCTCGG CTTCTCCGCA GCCGTGATTT CGAAACGCAT CAAGCGGCTC
GAAGACAGGC TCGGCACGCG CCTGCTGCAG CGGACGACGC GGCAGATCTC GATGACAGAG
GCCGGCCAGG GTTTCTACGA CCGCGTTCTC GGCATCCTCG CCGGGCTCGA GGAAGCCGAG
GCCTACGCCT CGGGCCGTTC TTCCCAGGTT CGAGGAACGC TGCGCATCTC CGCGCCGACC
TCGTTCGGGC GTTTGCATAT CGCGCCTCAT CTGACCGGCT TCATGAAGGA CCACCCAGAC
CTGAAGCTGC ACATCGTGTT GACCGACGAT TTTACCGATA TCGTCGCAGA AGGATTTGAC
CTCGCGATCA GAATAGGCGA ACTCAGCGAC TCGAGCCTCG TCGCCCGCAG ACTCGCGCCG
GTGCGCCGGC TTCTCTGCGC GGCACCAAGC TATGTCGCCA GTCATGGGAC GCCCAAGGAC
ATCGGCGAAC TCGCGAGCCA CATCTGCCTC CCGGCGCACA ACAACGACAA CTGGAAGCTG
GAGGGGCCGG AGGGAAATCT GTCCTATCGT CCGGAAGGGC CTCTCGTCAC CAATTCGTCG
GAGATCATAC GCGAAGCGGT GATTGCCGGC GCCGGCATCG CGTTGCGTTC CACCTGGGAT
ATCGGCAGGG AACTCCGGGA TGGGCGCCTC GTTCAGGTGC TGCCGCAATG GGAAGGATCG
CACAGGCTGA CGCTTTCGGC CGTCTATCCG AGCCGGCAAT TCCTTCCGGC CAAGGTCCGG
ATGTTCATCG ATTACCTCGC CGCACTCTAC GGCCCTGTGC CCTATTGGGA GCAATAG
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| Protein sequence | MTHLGDLEIF ARVVSTGSMS AAGRALGFSA AVISKRIKRL EDRLGTRLLQ RTTRQISMTE
AGQGFYDRVL GILAGLEEAE AYASGRSSQV RGTLRISAPT SFGRLHIAPH LTGFMKDHPD
LKLHIVLTDD FTDIVAEGFD LAIRIGELSD SSLVARRLAP VRRLLCAAPS YVASHGTPKD
IGELASHICL PAHNNDNWKL EGPEGNLSYR PEGPLVTNSS EIIREAVIAG AGIALRSTWD
IGRELRDGRL VQVLPQWEGS HRLTLSAVYP SRQFLPAKVR MFIDYLAALY GPVPYWEQ
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