Gene Smed_0348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0348 
Symbol 
ID5321181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp375292 
End bp375849 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content62% 
IMG OID640789283 
ProductMgtC/SapB transporter 
Protein accessionYP_001326041 
Protein GI150395574 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.184436 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGAAA TCTTCGCCGA CATCTTCGCA GATACGCATA CCCCCTATCC GATATTGTTC 
GCGCGTCTCT TCGGCGCCGT CCTGTTCGGG GCATTCATCG GCATCGAGCG CGAAAGGCGG
CAGCGGCCAG CGGGCCTGAG GACCCATATT CTCGTCAGCC TCGCCTCGGC GATCTTCGCC
GTGGTCGCCA TCGAAAGCGT TCACATGAAG AGCCTTTCGG GCCCGGAGGT GCGCATCGAT
CCCATTCGCG TGGTAGAAGC CGTAACGGCG GGCGTGGCCT TTCTCGCCGC CGGCATGATC
GTGTTCTCGA AGGGTGAAGT GAAAGGGTTG ACGACGGGCG CCGGCATGTG GCTCGCCGGA
GCGGTCGGAC TTTCTGTCGG TTTCGGTTTC TGGTTGATCG CGGTCTTTGC CGCCGTGACG
AGTCTCGTCG TACTCTTCGT CCTCGGCCGG TTGGAAGTCG CGCTGCAGTG GAAGGCGCCG
GAAGATTTCA ACGCGACCGA TGGCGCTTCG CGAGCGGGTG ATGATGCCCT GCAGGAACAG
GCTCGCACAC CTAAGTAG
 
Protein sequence
MNEIFADIFA DTHTPYPILF ARLFGAVLFG AFIGIERERR QRPAGLRTHI LVSLASAIFA 
VVAIESVHMK SLSGPEVRID PIRVVEAVTA GVAFLAAGMI VFSKGEVKGL TTGAGMWLAG
AVGLSVGFGF WLIAVFAAVT SLVVLFVLGR LEVALQWKAP EDFNATDGAS RAGDDALQEQ
ARTPK