| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0344 |
|---|
| Symbol | |
|---|
| ID | 5321177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 371323 |
|---|
| End bp | 372366 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789279 |
|---|
| Product | monosaccharide-transporting ATPase |
|---|
| Protein accession | YP_001326037 |
|---|
| Protein GI | 150395570 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.324095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0533702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG ATACCGCCTC CAGCAAGAGT ACGACCAAGG ACCAAGCTTC GATGCAGCAT
GAAGTAGCGC CGCAAAAATC CGTGATCCGC CGGCTGCTCG ACGGCCCGGA ACTGATGATC
TTCGGTTCGC TGATCATCAT CATAGCGATC TTTACGGTCA TGGCGCCGAC GGCATTCCTG
AGCGGTATCA ACCTGAGAAA CATGGCGATC GAAGCATCGA TGATGATGAT CCTCGCGGTC
GGCATGACCT ATGTGATCAT CACCTCCGGC ATCGATCTGT CGGTGGGCGC CGTGCTTGTC
TTCTCAAGCG TCGCGTCGTT GATTGCCATG CGCGCGACGG GCTCAGACGC ACCCTGGGTG
CCGGTGCTTG GCCTCGCCGT TGCGCTTGCC TCCGGAGCCT TCTGGGGGCT GGTCAACGGC
CTCCTCATCG CCCGAGCCCG GCTTACGCCG CTCATCGTCA CCCTTGCCAG CATGGGCATC
GCACTCGGTC TCGCCCGGCT GATGACCGGC GGCGTCGATC TGACCGGCGT GCCTCGCTCG
ATCGTCACAT CGATCGGTAT CGGCCGTATC GGCGGCATTC CAGTCATCGT GCTGATCGCC
TGCGTCTTCG CGTCCGTCGC CGGTATCGCT CTGCATATGA CCCGCTTCGG CCTTTATACC
TATGCAGTCG GCTCCAACGA GCAAGGAGCA CGCCGCGCCG GCATCAAGGT CGATCGGCAT
CTCATATCGA TTTATGTGTT TTCCGGCGTT TGCGCTGGAC TGGCCGGTTA TCTCACCCTC
ACCCGCTTCT CCTCGACAAC GATTTCCGGC CACGCCATGG ACAATCTGAA GGCCATTACA
GCGGTCGTCC TCGGCGGCGC CAGCCTCTTC GGTGGCATCG GCTCCATGTA CGGCACAGCA
GCCGGCGTGT TCATCCCTGT CGTACTGGCT TCGGGTCTGA TCATCGTCGG CCTGCCCAGC
TTCTGGCAGG AAGTGGCCGT GGGCATCGTC CTTCTCGCGG CCGTGCTGCT CGACCAGTAC
CGACGCCGCA CCCGCTCCTC CTGA
|
|---|
| Protein sequence | MTIDTASSKS TTKDQASMQH EVAPQKSVIR RLLDGPELMI FGSLIIIIAI FTVMAPTAFL
SGINLRNMAI EASMMMILAV GMTYVIITSG IDLSVGAVLV FSSVASLIAM RATGSDAPWV
PVLGLAVALA SGAFWGLVNG LLIARARLTP LIVTLASMGI ALGLARLMTG GVDLTGVPRS
IVTSIGIGRI GGIPVIVLIA CVFASVAGIA LHMTRFGLYT YAVGSNEQGA RRAGIKVDRH
LISIYVFSGV CAGLAGYLTL TRFSSTTISG HAMDNLKAIT AVVLGGASLF GGIGSMYGTA
AGVFIPVVLA SGLIIVGLPS FWQEVAVGIV LLAAVLLDQY RRRTRSS
|
|---|
| |