| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0223 |
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| Symbol | |
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| ID | 5321055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 245863 |
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| End bp | 247962 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789158 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001325917 |
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| Protein GI | 150395450 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.133149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.171909 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGCA AGCAACAGGG CGCGCGCCTT GCCAATCTTT GGGACGACGG CAAGGCGGCA
GGAATGACCG AGCCTGAAAG GCTCCTCTAT CGCTCGAACC TGCTCGGATC TGACAAGAGG
ATCACCAATT ACGGCGGCGG CAACACCTCG GCCAAGGTCA TGGAAAAGGA TCCGTTGACG
GGCGAGATGG TCGAGGTCCT CTGGGTCAAG GGCTCCGGCG GCGACGTCGG CACGATCAAG
ATGGACGGCT TCGCCACCCT CTATATGGAC AAGCTGCGGG CCCTCGAGGG CATCTATCGC
GGGGTCGAAT TCGAAGACGA GATGTTCGGG TATCTGCCGC ATTGCACCTT CAATCTCAAC
CCGCGCGCCG CTTCGATCGA CACGCCGCTG CATGCCTATG TTCCGAAGGT GCATGTCGAC
CACATGCATC CGGATGCGAT CATTGCCATC GCCGCCTCGA AGAACAGCAA GGAACTGACG
AGCAAGATAT TCGGAACTGA GATCGGCTGG CTGCCGTGGA AACGGCCCGG CTACGAACTC
GGTCTCTGGC TTGAAAGATT CTGCCGTGAG AACCCGGAAG CGCGCGGCGT CGTGCTCGAA
AGCCACGGCC TCTTCACCTG GGGCGACACG GCCAAGCAGG CCTACGAGAC GACGATCGAA
ATCATCAATC GCGCCATTGC CTGGTTCGAG ACGGAAAACA CGGGTCCGGC CTTCGGTGGA
CCGGCGAAAC CGGCGCTCGC CGGCGGTGAA CGCGTCGCCA TCGCCAGGAA ACTGATGCCT
GTCATCCGCG GTCTCATCAG CGGAGCGGAA AGCAAGGTCG GGCACTTCGA CGACAGCGAG
GCCGTGCTCG ATTTCGTAAC CTCTACAAAT CTGGAGCCGT TGGCAGCACT CGGCACCAGT
TGCCCCGATC ACTTCCTGCG CACCAAGATC CGCCCGCTGA TCGTCGACTT CGACCCGGCC
CAGCCGGACC TCGAAAAGAC GCTTGCGGGC CTGCCCGAGG CGATCGCGAC CTATCGCGCC
GATTACGCGG CCTATTACGA CCGCTGCAAG CGCGCCGACA GCCCGGCGAT CCGTGATCCG
AACGCCGTCG TCTATCTCCT GCCGGGCGTC GGCATGATCA CCTTCGCCAA GGACAAGGCG
ACGGCGCGCA TCTCCGCGGA GTTCTACGTC AACGCCATCA ATGTCATGCG CGGCGCGTCC
GGCGTCTCGA CCTATGTCGG CCTGCCGGAG CAGGAAGCTT TCGACATCGA ATACTGGCTG
CTCGAAGAAG CCAAGCTTCA GCGCATGCCG AAGCCGAAGA GCCTTGCCGG GCGCATCGCT
CTCGTCACCG GCGGCGCCGG CGGCATAGGC AAGGCGACAG CCAACCGGCT GATGCAGGAA
GGCGCCTGCG TCGTGCTTGC AGATATCGAC GAACGGGCGC TCGAGGCTGC GCAGAACGAG
CTTTCGAACC GCTATGGCAA GGATTTCGTC CGCTCCGTCA ACATGAACGT CACCGATGAG
GCGGCCGTCG CGTCGGGTTT CGGCGACGCG CTCCTGGCCT TCGGCGGTCT CGATATTCTC
GTCTCCAATG CGGGTCTCGC GACGTCGGCT GCTGTCGAGG ACACCACGCT GGCGCTCTGG
AACAAGAATA TGGACATTCT CGCGACGGGC TATTTCCTGG TCTCGCGCGA GGCTTTCCGC
ATCTTCCGCA ACCAGAAGAC CGGCGGAAAT GTCGTCTTCG TCGCTTCGAA GAACGGGCTT
GCGGCCTCGC CCGGAGCTTC TGCCTATTGC ACTGCCAAAG CGGCCGAAAT CCACCTCGCC
CGCTGCCTGG CGCTCGAGGG GGCTTCGGCG CAGATTCGCG TCAACGTGGT CAATCCCGAC
GCGGTACTGC GCGGTTCCAA GATCTGGACC GGCGAATGGA AGGAACAGCG CGCCGCCGCC
TACAATATGG ACGTCGATGA ACTGGAGGCG CATTACCGCG AGCGCTCCAT GCTGAAGCTC
AGCGTATTCC CGGAAGATAT CGCCGAGGCA ATCTACTTCC TTGCTTCCGA CATGTCGGCG
AAGTCCACCG GTAACATCGT CAATGTCGAC GCGGGCAATG CCCAGTCGTT CACGCGCTGA
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| Protein sequence | MLGKQQGARL ANLWDDGKAA GMTEPERLLY RSNLLGSDKR ITNYGGGNTS AKVMEKDPLT
GEMVEVLWVK GSGGDVGTIK MDGFATLYMD KLRALEGIYR GVEFEDEMFG YLPHCTFNLN
PRAASIDTPL HAYVPKVHVD HMHPDAIIAI AASKNSKELT SKIFGTEIGW LPWKRPGYEL
GLWLERFCRE NPEARGVVLE SHGLFTWGDT AKQAYETTIE IINRAIAWFE TENTGPAFGG
PAKPALAGGE RVAIARKLMP VIRGLISGAE SKVGHFDDSE AVLDFVTSTN LEPLAALGTS
CPDHFLRTKI RPLIVDFDPA QPDLEKTLAG LPEAIATYRA DYAAYYDRCK RADSPAIRDP
NAVVYLLPGV GMITFAKDKA TARISAEFYV NAINVMRGAS GVSTYVGLPE QEAFDIEYWL
LEEAKLQRMP KPKSLAGRIA LVTGGAGGIG KATANRLMQE GACVVLADID ERALEAAQNE
LSNRYGKDFV RSVNMNVTDE AAVASGFGDA LLAFGGLDIL VSNAGLATSA AVEDTTLALW
NKNMDILATG YFLVSREAFR IFRNQKTGGN VVFVASKNGL AASPGASAYC TAKAAEIHLA
RCLALEGASA QIRVNVVNPD AVLRGSKIWT GEWKEQRAAA YNMDVDELEA HYRERSMLKL
SVFPEDIAEA IYFLASDMSA KSTGNIVNVD AGNAQSFTR
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