| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0115 |
|---|
| Symbol | |
|---|
| ID | 5320944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 127699 |
|---|
| End bp | 128709 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640789048 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_001325810 |
|---|
| Protein GI | 150395343 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.459319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTGC CGCCAATCCT GTCCGGAAAA GTGAGACTGC CTGTCGTAGG GGCGCCGCTT
TTCATCGTCT CTCATCCCAA GTTGACGATC GCGCAATGCA AGGCCGGGAT TATCGGTGCC
TTTCCGGCCC TCAACGCCCG CCCGCAATCG CAACTCGACG AATGGTTGTC GGAGATCACC
GAAACGCTTG CGGCCCACGA CGCCGACTAT CCCGAACGCC CCGCCGCGCC TTTTGCGGTG
AACCAGATCG TGCACAAGTC GAACGCCCGT CTCGAACAGG ACCTGATGCT TTGCGTCAAG
TACAAGGTGC CCGTCGTCAT CTCCTCGCTC GGCGCCGTCC CTGAGGTGAA TGCCGCGATC
CATTCCTATG GGGGTATCGT GCTCCACGAT GTCATCAACA ACCGTCATGC AAATTCCGCC
ATCCGCAAGG GCGCCGACGG GCTCATCGCA GTCGCGGCAG GTGCCGGCGG CCATGCCGGA
ACTCTCTCGC CCTTCGCGCT CGTCCAGGAG ATCCGCGCCT GGTTCGACGG GCCGCTGCTG
CTTTCCGGCG CGATCGCCAC CGGCGACGCG ATCCTTGCAG CGCAGGCAAT GGGCGCCGAC
ATGGCCTATA TCGGCTCTCC CTTCATCGCC ACCGAGGAGG CTCGCGCGAG CGACGCCTAC
AAGCAGATGA TCGTCGACAG CAATGCCGCA GATATCGTTT ATTCCAATTT CTTCACCGGC
ATTCACGGCA ACTATCTGAA GCCCTCGATC CTCGCCGCCG GAATGGACCC GTCCAATCTG
CCCGAAGCAG ACCCCTCCAA GATGGACTTC GGCCAGGCCG CCGAGGGCGC CAAGGCATGG
AAGGACATCT GGGGCTGCGG CCAGGGGATA GGCGCCGTGC ATGAAATCGG CACCGTCGCA
CGCCTGGTCG ACCGGCTCGA ACAGGAATAC GACACCGCGC GCGCCCGCCT CGGCCTCGCC
TCCGGCGCTG ACATCCGGCG GGGTAAGGAA TTTTCAACTT CTCGAAACTG A
|
|---|
| Protein sequence | MSLPPILSGK VRLPVVGAPL FIVSHPKLTI AQCKAGIIGA FPALNARPQS QLDEWLSEIT
ETLAAHDADY PERPAAPFAV NQIVHKSNAR LEQDLMLCVK YKVPVVISSL GAVPEVNAAI
HSYGGIVLHD VINNRHANSA IRKGADGLIA VAAGAGGHAG TLSPFALVQE IRAWFDGPLL
LSGAIATGDA ILAAQAMGAD MAYIGSPFIA TEEARASDAY KQMIVDSNAA DIVYSNFFTG
IHGNYLKPSI LAAGMDPSNL PEADPSKMDF GQAAEGAKAW KDIWGCGQGI GAVHEIGTVA
RLVDRLEQEY DTARARLGLA SGADIRRGKE FSTSRN
|
|---|
| |