| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0110 |
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| Symbol | |
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| ID | 5320938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 121776 |
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| End bp | 123476 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640789042 |
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| Product | Long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_001325805 |
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| Protein GI | 150395338 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.963067 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGAAG CAAGTACGCA GCAGGCAGGT TCCAGCACGG CGAAGATCTG GCTCGCATCA
TACCCGCCGG GCGTGCCTGC CGAGATCGGC CCTCTCACCT ATCGTTCCAT CGGAGAATTT
TTCGATCATG CGGTCGCGCA ACATTCCTGG CGGCCCGCAT TCACCTGCAT GGGAAAGGCG
CTGACCTTCT CGGACCTCAA TGCGTATTCG GCAAAGATCG GCGCCTGGCT GCAGTCGCTG
GGTCTTGCGA AGGGCGACAG GGTCGCGGTG ATGATGCCCA ATGTCCTGCA AAATCCCGTC
ATCGTCTATG GAATCCTGCG AGCCGGCTTC ACCGTCGTCA ACGTCAATCC GCTCTATACG
CCGCGCGAAC TGGAGCATCA GCTGGTCGAC TCCGGCGCCA AGGCGATCTT CGTGCTTGAG
AACTTCGCGC ATACTGTCGA GCAGGTTCTT GCCCGCACGG CGGTCAAGCA TGTGGTGGTC
GCCAGCATGG GCGACATGCT CGGCGCAAAA GGGTTGATCG TCAATCTGGT GGTGCGCCGC
GTCAAGAAGC TCGTCCCCGC CTGGTCGATT CCCGGACATC TTTCGTTCGG GGCGGTTCTT
GCCAGGGGAG CGAAACTCGG CTTCAAGCGG GCGAACGTGG CACCGTCGGA TATCGCCTTC
CTGCAATATA CCGGTGGCAC CACCGGCGTT TCCAAGGGCG CAACGCTGAC GCACGCCAAT
CTTCTTTCCA ACATGGCCCA GATGGAACTG TGGCTGAACA CGGCCTTCCT GCGCAAGCCG
CGCCCGGAAA GCCTCACCTT CATGTGCGCG CTGCCGCTCT ATCACATCTT CGCGCTTACG
GTGAATTCGC TGATGGGTCT TGCGACCGGC GGCAACAATA TCTTGATACC GAATCCGCGC
GACATTCCCG CCTTCGTCAA GGAACTCGGA AAGTACCGGA CGAACATTTT CCCGGGCCTG
AACACACTGT TCAATGCGTT GATGAACAAT GCCGAGTTCC GCAAGGTGGA CTTCTCGTCG
CTGATCCTGA CCTTCGGCGG CGGGATGGCA GTGCAGCGAC CGGTCGCCGA ACGCTGGCTG
GAAATGACGG GCTGCCCTAT CCACGAGGGC TACGGGCTTT CGGAGACATC GCCCGTCGCG
ACCGCCAATC GCCTCGATAC CGACGACTTC ACCGGCACGA TCGGCATACC GCTGCCCTCG
ACGGAGGTGG AGATCCGCGA CGAGGACGGA AATACCCTCC CCTTGGGTGA AGTCGGCGAA
ATATGCATCC GCGGGCCGCA GGTGATGGCA GGTTACTGGC AGCGCCCCGA GGAAACGGCG
AAAGCCATTT CGCCGGACGG CTTCTTCCGG ACCGGCGATG TCGGCTTCAT GAACACCGAG
GGGCTCACCA AGATCGTCGA TCGCAAGAAG GATATGATTC TCGTCTCGGG GTTCAACGTG
TTCCCGAACG AGATCGAAGA GGTGGCGGCG ACCCATCCCG GCATTCTCGA ATGTGCCGCA
ATCGGTATTG CCGATCCGCA TTCCGGCGAA GCGGTCAAGC TCTTCGTCGT GCTTAAGGAT
CCGAATCTCA CTGAAGAAGA GATCAAGCGC CACTGCGCAG CCAGTCTTAC CAACTACAAG
CGGCCGCGTT TCGTGGAAGT CCGCACCGAA CTGCCGAAAT CGAATGTCGG CAAGATCCTG
CGCAAGGACT TGCGCGGCTA G
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| Protein sequence | MAEASTQQAG SSTAKIWLAS YPPGVPAEIG PLTYRSIGEF FDHAVAQHSW RPAFTCMGKA
LTFSDLNAYS AKIGAWLQSL GLAKGDRVAV MMPNVLQNPV IVYGILRAGF TVVNVNPLYT
PRELEHQLVD SGAKAIFVLE NFAHTVEQVL ARTAVKHVVV ASMGDMLGAK GLIVNLVVRR
VKKLVPAWSI PGHLSFGAVL ARGAKLGFKR ANVAPSDIAF LQYTGGTTGV SKGATLTHAN
LLSNMAQMEL WLNTAFLRKP RPESLTFMCA LPLYHIFALT VNSLMGLATG GNNILIPNPR
DIPAFVKELG KYRTNIFPGL NTLFNALMNN AEFRKVDFSS LILTFGGGMA VQRPVAERWL
EMTGCPIHEG YGLSETSPVA TANRLDTDDF TGTIGIPLPS TEVEIRDEDG NTLPLGEVGE
ICIRGPQVMA GYWQRPEETA KAISPDGFFR TGDVGFMNTE GLTKIVDRKK DMILVSGFNV
FPNEIEEVAA THPGILECAA IGIADPHSGE AVKLFVVLKD PNLTEEEIKR HCAASLTNYK
RPRFVEVRTE LPKSNVGKIL RKDLRG
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