| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0056 |
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| Symbol | truA |
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| ID | 5320883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 58914 |
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| End bp | 59657 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640788987 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001325751 |
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| Protein GI | 150395284 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00478074 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCCCCGCT TTCGCCTGAT CGTCGAATAT GACGGTACCG ATTATGTCGG CTGGCAGCGG
CAGGACAACG GCCCCTCTGT TCAAGGAGCG ATCGAAAAAG CGGTCCTGTC GCTTACGGGC
GAGACGGTCC GGGTCCGCGG CGCAGGGCGA ACCGATTCCG GCGTTCACGC CAGGGGTCAG
GTGGCTCATC TCGATCTAAC CCGCGCGTGG AAGCCGTACA CGCTTCAAAA CGCCCTCAAC
GCGCATCTGT CGCTTGCCGG CGAGCGCGTT TCGATCCTGG AGGTCGAGGA AGCCGCCGCC
GATTTCGACG CGCGTTTCTC GGCCATCCGC CGACACTATC TCTATCGGAT CATTTCCCGC
CGATCACCGC TGGCGCTTGA GGCGCGCCGT GCCTGGTGGG TGCCGAAGGC GCTTGATCAT
GACGCAATGC ACGAGGCAGC GCAGCGCCTC TTGGGCCATC ACGACTTCAC GACCTTCCGC
TCTGCCAACT GCCAGGCGAC GAGCCCGATG CGCACGCTGG ACCGGCTGGA CGTCACGCGC
ACGGGCGACC TGATCGAAAT CCGCGCCAGC GCGCAAAGCT TCCTTCATAA CCAGATCCGT
TCTTTCGCGG GCTCCTTGAA GCTGGTCGGC GAGAGCAAAT GGACGCCGGA CAACCTCCAA
GCCGCGCTCG AGGCGCGGGA CCGCAAAGCC TGCGGTCCGG TCGCCCCGCC GGACGGACTT
TATTTCATGC GCGTCGATTA CTGA
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| Protein sequence | MPRFRLIVEY DGTDYVGWQR QDNGPSVQGA IEKAVLSLTG ETVRVRGAGR TDSGVHARGQ
VAHLDLTRAW KPYTLQNALN AHLSLAGERV SILEVEEAAA DFDARFSAIR RHYLYRIISR
RSPLALEARR AWWVPKALDH DAMHEAAQRL LGHHDFTTFR SANCQATSPM RTLDRLDVTR
TGDLIEIRAS AQSFLHNQIR SFAGSLKLVG ESKWTPDNLQ AALEARDRKA CGPVAPPDGL
YFMRVDY
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